Capsicum annuum (peppers): 107878503
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Entry
107878503 CDS
T04646
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107878503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107878503
03009 Ribosome biogenesis [BR:
cann03009
]
107878503
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107878503
Spliceosome [BR:
cann03041
]
Complex A
U1 snRNP components
U1 related factors
107878503
Complex B
107878503
Ribosome biogenesis [BR:
cann03009
]
Eukaryotic type
Pre-60S particles
Helicases
107878503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107878503
NCBI-ProteinID:
XP_016581010
LinkDB
All DBs
Position
1:76373276..76383957
Genome browser
AA seq
1148 aa
AA seq
DB search
MGTPEAATASLGPRYAPDDPTLPQPWKGLVDGSTGLLYYWNPETNVTQYEKPSALPPPLP
PGPPPEDSTPKLAPIPGASTVQQTDSQGQQSQQAFAQQGQQMIHMSQHPYVMQPHGSQGV
STGQQQELAGPVMQQVSFMPQLRSQMIQQPGHQMPSQMGQTPNQPGPHVSHSSMQQITPQ
PLGSQAQAFPSVQMGLPHGYQFSHHQAQHVAYPQNFPPQGQQIPPQQNQRVPRNNKQFSH
QQEHKVGFQQREDVDFPQGKQVEFSPQQFQQTGASSAQNLPVGTGSVIRPQMSAQRAQAL
QFGDSSVNIQQPSSLGQWQQNTNDPGHKPPGPHFPDQMGSSTTHGHDMDTPPVGSKGYEE
NPLGRGGNDYYYNSNMDGRIRPPPQHPKLAAIPVARNQHEMRAGDPPLQNPVPALPSGFN
SMGGTPMPNMYGQAAGGSPFRNPNLMRPPGALTGPPGAIHQSSVEIYLQKHEVTATGGDV
PAPFMTFEDTGFPPEILREIQFAGFTSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLGYL
IPAFVHLKLRRNNPQNGPTVVVLSPTRELATQIQDEALKFGRSARVSCTCLYGGAPKVHQ
LKELERGTDIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIP
PQRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDQLAANKSITQYIEVVPQMEKQRRL
EQILRSQERGAKAIIFCSTKKLCDQLARSIGRSFGAAAIHGDKSQGERDWVLNQFRSGKT
PILVATDVAARGLDIPDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFLSDQDWKY
APDLVKVLQGANQQVPPDVREMALRAGGWDRGGVNRSDLVNGDGARTRWDSGGRGGMRDV
AFGGRGGMRDGGFGGRGGMRDGGFGGPSGMRDGGFGGRGRRDGHFGGRGGMRDNHFGGRG
GRGGAHSGWDRNVRYDNPDVRAHGRGRGRGWFDNRRDMPSRGRGRSCSPSPERVRTWGSR
SRSRSRSRSRSRSYSRSYSRSRSHSYSPRRSRSLSRSHSRSGDRYQRRPRQSKFDQMAPD
PGMSRVQVAPPSVMHPLPVGAPVDGFSGAASVESKPNMEVAPESAMSPVSTGTRGNGFPV
SEVIEQNP
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgggaactccggaggctgctacagcttccttaggaccccgttatgcacctgatgatcca
actttaccccaaccttggaagggcttagttgatggtagtactgggttgttgtactattgg
aatccagaaactaatgttacccagtatgagaagccatcggctttacctcctccactgcct
cctggtccacctcctgaagattctacacctaagttggctccaattccaggagctagcaca
gtgcaacaaaccgatagtcaaggccaacagagtcagcaggcctttgctcaacaaggccaa
caaatgatacacatgtcacaacatccctatgtaatgcaaccacatggatcgcaaggtgtt
tcaacagggcagcaacaagaattagctggtcctgtcatgcaacaggtatcctttatgccg
caacttcggtctcaaatgatccagcagcctggtcatcagatgccttctcaaatgggacaa
actcctaatcagccagggccacatgtttctcattcatcaatgcaacaaataacgccccag
ccacttggctcccaagcacaagcattcccaagtgtacaaatgggactgccacatggttat
caattttctcatcaccaggcacaacatgttgcgtatccacaaaattttcctccacaggga
cagcaaattccaccgcagcaaaatcagcgtgttccacggaataataaacagttctcccat
caacaagagcataaagtgggatttcaacaaagggaagatgttgatttcccccaagggaaa
caagttgagttttcgccccagcaatttcagcaaactggtgcatcatctgctcagaatctg
cctgtagggactggttctgttatcaggcctcagatgtctgctcagcgtgctcaagctttg
cagtttggcgattcttctgtaaatattcaacaaccatcatctttgggtcaatggcagcaa
aatacaaatgatcctggtcacaagccgcctggtccacattttcccgatcagatgggatca
agtaccacacatggtcacgatatggacacccccccagttggatcaaagggttatgaggaa
aacccacttggaaggggaggaaatgattattattacaacagtaacatggatggtcgaatt
aggcctccacctcagcaccccaagcttgcagctatacctgtagcaagaaatcaacatgaa
atgagggcgggtgatcctcctcttcaaaatccagtaccagcacttcctagtgggttcaat
agcatgggtggcactccaatgccaaatatgtatggtcaagcagctggtggctctccattt
cgaaatcctaacctcatgcggccacctggagcactcacaggacctccaggagccattcac
caatcgtccgttgagatttacctccagaagcatgaagtaactgcaacaggtggtgatgtc
cctgctccattcatgacatttgaagatactgggttcccaccagaaatactgagagagatt
cagtttgcgggattcacttcacccactcccattcaggcacaaacatggcctatagctctg
caaaatagggatatagtggccattgcgaagacaggttctggcaaaacattgggctatcta
attcctgcatttgtccaccttaaactacggcgcaataatcctcaaaatggcccaactgtg
gtggttttatctccaacccgagagcttgccacacaaatacaagacgaagcactgaagttt
ggtcgatctgccagggtttcttgcacgtgcttgtatggaggtgcacctaaagttcaccag
ttgaaagaattagagcgcggaacagatattgttgttgcaactcctggtcggctgaatgac
atccttgaaatgaaaagaattgactttaggcaggtttctcttcttgttctagatgaggct
gatcgaatgcttgacatgggttttgaacctcagatccgcaagattgtaaatgagataccc
ccacaaagacaaacacttatgtacacagctacatggccgaaagaagtgcgaaaaatagct
ggtgatcttcttcgaaatcctgtccaggttaatattgggaatgttgatcagcttgcagca
aacaagtctatcacacagtacattgaagtggtcccgcaaatggagaagcagagacggtta
gaacagattcttagatcacaagaaaggggagctaaagctattatattctgttccacaaag
aagttgtgcgaccaacttgcacgcagcattggtcgaagctttggagctgcagctattcac
ggagacaagtcccagggtgagagggactgggttctcaatcaatttcgctctggtaagacg
ccaattttagtagcaactgatgttgctgctagaggactggacatacctgatataagagta
gtgatcaactatgattttccgactgggattgaggattatgttcaccgaattggaagaact
ggtagggctggtgcaactggtgtttcatacacctttttatctgatcaggactggaaatat
gctcctgatcttgttaaagttctgcaaggtgcaaatcagcaagtgcctcccgatgtgaga
gagatggctttacgtgctggtggctgggatagaggtggcgtgaaccgttctgatcttgtt
aatggtgatggtgcccgtacacgttgggattctggtggccgtggtgggatgagggatgtt
gcgtttggtggccgtggtggtatgagggatggtgggtttggtggtcgtggtgggatgagg
gatggtgggtttggtggccctagtgggatgagggatggtgggtttggtggccggggtagg
agagatggtcactttggtggccgtggtgggatgagggataaccattttggtggccgtggt
ggtaggggtggtgctcatagtggttgggacaggaatgttcggtatgacaatccagatgtg
cgagcacatgggagaggtcgtgggcgtggatggtttgacaatagaagagacatgccaagt
cgaggtcgaggaagaagttgcagccctagtcctgagagggttcgaacatggggtagtaga
agtagaagcaggagcaggagtcgcagcagaagcagaagttacagcaggagttacagccga
agccggagccacagctatagcccaaggcgtagtcgtagccttagccgcagccacagccgt
agtggtgatagatatcaaaggaggcctcgccaaagtaagtttgatcagatggcaccagat
ccaggaatgtcgagggttcaggttgctcctccatccgtgatgcatccactgcctgtaggt
gcaccagttgatggattttctggagctgcgtcagtggaatccaaaccaaatatggaggta
gccccagaatctgctatgtcgcctgtgtctacaggaacacgaggaaatggcttcccagta
tctgaggtcatagagcagaacccttga
DBGET
integrated database retrieval system
