Capsicum annuum (peppers): 107878847
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Entry
107878847 CDS
T04646
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107878847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107878847
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107878847
mRNA degradation factors
5'-3' decay
Decapping complex
107878847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Phage_lysozyme
Beta-prop_Vps41
DUF6124
Motif
Other DBs
NCBI-GeneID:
107878847
NCBI-ProteinID:
XP_016581485
LinkDB
All DBs
Position
7:225748648..225760039
Genome browser
AA seq
1395 aa
AA seq
DB search
MASSPGNNNPNQPATGPFDIHKFFNPNPQNPNFISPPNASYPPPTGVGATTGVVTGAGVY
PYHPQFTHHLPQQHHQQQQQRSMSFPTPPLQPPTPPPHHYPNPNPNPNPNPGARLMALLS
APPSTLEVPVPGQSSMPMPSILPTTSGSEISDFGGPGPMRLPSSKLPKGRHLSGDHIVYD
IDVRFPSEVQPQLEVTPITKYGSDPGLVLGRQIAVNKTYICYGLKLGAIRVLNINTALRS
LLKGLAQRVTDMAFFAEDVHLLASASVDGRVYIWKITEGPDEEEKPQITGRIVIAIQIVG
EGESVHPRVCWHCHKQEILVVGIGKRILKIDTTKVGKGAVFSADEPLRCPVDKLVDGVQL
IGTHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKPLPIAVLRPHDGHPVNSVTFLAA
PHRPDHIILITGGPLNREIKLWASASEEGWLLPSDAESWRCTQTLELKSSAEANVEEAFF
NQVIALSQAGLLLLANAKKNAIYAVHLEYGPNPEATRMDYIAGFTVTMPILSFTGTSDLL
PHGEQIVQVYCVQTQAIQQYALDLSQCLPPPTESVVFERTESGVSRDAASIEGLAPVDPP
GSKQEVFPLSSSAPKQEVFPLSSSAPKSSVHEIGSEISPTARYPTSTVPTESAPSQEFAS
SIVETKSSTLPCVTSDSDIAPSASPPPPLSPKLSRNPSGFKGPSNSFGANASDNDQVGNL
KVGEYPVDSPKDGTLPNLSSVASLDDEPKMSRDDVPSGISHPVKFKHPTHLVTPSEILMA
RSSSEVSIVNEQKNESEVNIQDSVNKNDTRNVEMEVKAGGEAKFSEKTDIGTQELHSFVS
ENKEKAFCSQASDLGFEMARECRALSPENYAVEESRQFDGVNGSEGPSQPSTTPEENHDS
SKEISEKDLDSTMSASAHQSPAPSAKGKKQKGKNSQVSGPSSSSSAFNSTDSPNEAVVSS
STPSMETAFSQILSVREMLNQVLTLQKETQKQMETMVAVPVAKEGRRLEAALGRSMEKFV
KANSDALWARLQEESAKQEKSLRDRTQQITNLISNCLNKDMPGLMEKLMKKELAAVGQAV
ARSIAPTIEKTISAAISEAFQKGVGDKSVSQLEKAVNSKLEATVARQIQAQFQTSGKQAL
QETLKSTLEVSVIPAFEMSCKAMFEQVDLTFQKGFSDHLVAAQQQFESMHSPLALTLRDA
INSASAMTQTLSGELADSQRQLLALAVSGANSQSANPLVSHMNNGSLLQDKIETPPDPTK
ELSRLLGEHKYEEAFTAALQRSDVSIVSWLCSQVDLPGILSSNPLPLSQGVLLSLLQQLS
CDIGTETGQKLSWMGDLLPAINPTDPMIAMHVRPIFEQVYQILHHRRNVPNAPPAEVSNI
RLILHVINSMLMIGK
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcacctggcaataataatccaaatcaacccgctactggccctttcgatatt
cacaaattcttcaaccctaatccccaaaaccctaatttcatttctccccctaacgcttct
tatccaccccccacaggagtcggtgctactaccggagttgtcaccggtgccggagtttac
ccctatcatccccaattcacacaccacttacctcaacagcatcatcaacagcaacaacaa
agatccatgtctttccctaccccaccacttcaaccacccacacccccacctcaccattac
ccgaacccgaatcctaatcctaatccgaatccaggtgcgaggttaatggctttgttaagt
gctcccccttcgactcttgaagttcctgtacctggtcaatcgagtatgccgatgccgagt
atactgcctactacttccgggtcggagatttcggattttggaggtccgggaccgatgaga
ttgccgagtagtaagttaccgaaagggcgacatttgagtggtgatcatattgtttatgat
atagatgttaggtttcctagtgaagtgcagccacagctggaggttacgccaattactaag
tatggttcggatcctgggcttgtattaggcaggcaaatcgcggttaataagacatatata
tgttatggattgaagttgggagctattcgggttctgaatattaatactgcattgagatca
ttgcttaaaggtcttgctcagagggtcacagacatggctttctttgcagaggatgttcat
ctcttggctagtgcgagtgttgatggccgggtttatatatggaaaattactgaaggacca
gatgaagaagaaaagccacaaattacaggaaggattgtcattgctattcaaattgtgggt
gaaggggaatctgttcacccacgtgtttgttggcattgtcataaacaagaaattcttgtg
gttggaattgggaaacgcattttgaaaattgataccacgaaagtgggaaaaggtgcagta
ttttcagctgatgaacctctcaggtgtcctgttgacaagttggttgatggtgtacaactt
attggtacccacgatggagaagtgactgatttatcaatgtgccagtggatgaccactcgt
ttggtttctgcttcagtggatggcacgataaagatatgggaagaccggaagccacttcca
atcgcagttctcaggcctcatgatggtcatcctgttaattctgttaccttcttggctgcc
ccacaccgcccagatcacatcatactcatcactgggggtcctcttaatcgggaaataaag
ttatgggcatcagcaagtgaagaaggctggttgcttcctagtgatgctgagtcttggcgg
tgtacgcagacgttggagctgaagagttcagctgaggctaatgtcgaagaggcttttttt
aaccaagttatagccttgtctcaagcaggtctgctcctacttgctaatgcaaaaaagaat
gctatatatgctgtgcatctggagtacggcccgaacccggaggctacccggatggattac
atagccggatttacagtgaccatgccaattttgagtttcactgggacgagtgacctattg
ccccatggcgaacagattgtgcaggtgtattgtgtacagacgcaggccattcagcaatat
gcgttggacttgtcccagtgcttaccacctccaacagagagtgtggttttcgaaaggaca
gaatccggtgtttcgcgtgatgctgctagtattgaaggacttgctcctgttgatccccct
ggaagtaaacaggaggtgtttcctttatctagttctgcacctaaacaggaggtgtttcct
ttatctagttctgcacctaaatcatcagtacatgaaattggctcggaaatttcaccaaca
gctagatatcctacaagtactgtacctactgaatcggccccctctcaagaattcgcttcc
tccattgtagaaactaaatcgtctactttgccctgtgtaactagtgacagtgatattgcc
cccagtgcatcccccccccctcctttgagtcctaagttgtctcgaaacccatctggtttt
aaaggtccgtcaaacagctttggggctaacgcctctgataatgaccaggttggaaatcta
aaagttggtgaatatccagttgattcgccgaaggatggcacgctcccaaacttgtcctct
gttgcttccttggatgatgaacccaaaatgtcaagggatgatgttccctctggtatcagt
catcctgttaagttcaagcacccaactcatttggtgactccttcagaaatattgatggct
agatcatcctctgaggttagcattgttaatgagcagaaaaatgagtctgaagtgaatatc
caggattctgtaaataagaatgacacccgcaatgtagagatggaggttaaagctggcggt
gaagcgaaattcagtgagaaaactgatattggcactcaagaacttcattctttcgtgtca
gaaaataaggagaaagccttttgctctcaagcttctgatcttggattcgaaatggctcga
gaatgtcgtgccttatctcctgagaactatgctgtagaggaatctaggcagtttgatggg
gttaatggaagtgagggaccatctcaaccttcaactacaccagaagaaaatcatgactct
tcaaaggagatctcggaaaaggatttagactcaacaatgtctgcctctgctcatcagtca
ccagctcccagtgcgaaagggaaaaagcaaaaggggaagaattctcaagtatctggccca
tcttcatcatctagtgcttttaattcaacagattctccaaatgaggctgttgtcagctca
agtaccccttctatggaaactgctttttcacaaattttgtccgtgcgtgagatgctaaat
caggttctgactctgcaaaaagaaacacaaaagcagatggaaacgatggttgctgttccc
gtggccaaagaaggaagaagacttgaagctgccttgggacggagcatggaaaaatttgtg
aaggccaattctgatgctttatgggctcgtttacaagaagagagtgcaaaacaggagaag
tctcttcgtgatcgtacacaacaaataaccaatttgatctctaactgcttaaacaaggac
atgccagggctgatggaaaaattaatgaagaaagaactagcagctgttggacaagctgtg
gcacgcagtattgccccaactattgagaaaactatatcagctgcaatttctgaggcattc
cagaaaggagttggtgacaagtcagtgagccaactagagaaagcagtaaactccaaactc
gaagctactgtagctagacaaatccaagcacaattccaaacctctggcaagcaagctctt
caggaaacactgaagtctactttggaagtctcagtgatcccggcctttgagatgtcatgc
aaggcaatgtttgagcaagtagatttaacatttcagaaaggcttttctgaccacttggtt
gctgcacaacaacaatttgagtccatgcattcaccattggcacttactctaagagatgcc
atcaattcagcatcggcaatgacccagacattgagcggagagcttgctgatagtcagaga
cagttgcttgctcttgcagtttctggagcaaattcccaatcagcaaatccactggttagc
cacatgaataatggatcattgctgcaggacaagattgagacacctccagatccaaccaaa
gagttgtctagactattaggggagcacaagtatgaggaagcattcactgcagcattacaa
aggagtgatgtgtcaattgtctcatggttatgctctcaggttgatttgcctgggatttta
tcctcgaatcctctcccattgagtcaaggagtgctcctttcacttcttcagcagttgtcg
tgtgatattggcacagagacaggccaaaagctctcctggatgggagatttgctacctgcc
ataaatccaactgacccaatgattgcgatgcatgttcggcctatctttgagcaagtatat
cagatattacatcatcgcagaaatgtccctaacgcgccacctgctgaagtttcaaacatt
cggctgattttgcatgttatcaattcgatgctgatgatcggtaaatga
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integrated database retrieval system
