Corynebacterium anserum: GP473_06645
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Entry
GP473_06645 CDS
T07289
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cans
Corynebacterium anserum
Pathway
cans03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cans00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GP473_06645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cans03400
]
GP473_06645 (mfd)
Enzymes [BR:
cans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GP473_06645 (mfd)
DNA repair and recombination proteins [BR:
cans03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GP473_06645 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QNH96378
UniProt:
A0A7G7YPF8
LinkDB
All DBs
Position
complement(1594659..1598414)
Genome browser
AA seq
1251 aa
AA seq
DB search
MSPKASQSAVSNADSAGSSTTINAKIPSLAGVLRAAARDSKLRGVVTHIGEPTLHMQAPE
GVWPFIAGTIAQHAPLLVVTASGRQADDLGVALRAMLGDVVEVFPAWETLPHERLSPGVE
TVSQRMRVMRRLSLARSGESDATTPPLRVVVAPTRSLVQPIQEHLGEVEPIRLLEGEEID
FERLQERLVLFGYSPVDVVAKRGHFAVRGGIVDIFPATEELPVRVEFWGDEVSEVRAFSV
GDQRTIPGQIERAINVYPCRELLLTDSVTKRAAELSVERASNPELADLLDKISQKIAAPG
MESLIPVLHDGPLVTLPELMPERTHTLITAPARVYRRAQDLIETGRQFMEAGWDIAAMGG
AAPMEGVAYLDVNEVRDAQHDCPWWTLSPMGMADADNGFASDVLELDYQPAPAPHGDLDA
IGALMGEIRRRVEGGGRVAFAAPTPTVAGRMLRRMKEAGIHAEAIGVDLKGQRGLGRVRQ
SAFTCADEPAAGTVSIYHAVSHAGVDFPFAGDDSQPPMLFLTETDLTGNRVEAAATGRRK
PAKKRNRVDPLALEPGDLVVHDSHGIGKFIKMTERTVGRGADASRREYLVLEYAPSKRGG
PGDQLYVPMDQLDMLSRYVGGERPALSKMGGADWKSTKRKARGAVREIAAELVQLYAQRQ
AAPGYAFAPDSPWQREMEEAFPYTETEDQWNAIEAVKADMEKAVPMDRVIIGDVGYGKTE
VAVRAAFKAVQSGKQVAVLVPTTLLAQQHYATFTERMQDFPTTIRELSRFTGPKESKDVL
KGMADGTVDIVIGTHRLLQTGVQWKDLGLIVVDEEQRFGVEHKEHIKALRTHVDVLTMSA
TPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGPQENKHVAAAIRRELLRDGQVFYVH
NRVKDIEKVAGDIRAMVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLD
ISNANTLIVENAHHMGLSQLHQLRGRVGRSRDRGYAYFLYPKGEVLTETSYDRLSTIAAN
NDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGEVVD
GREEEKKEIRVDLPIDAHIPSEYVASERLRLEAYRKFAEVETDEDVVKVLDELQDRYGES
PQQVMHLAAVSRLRMLCRDLKVGEVVQAGTKISFSPIELADSGQVRLKRLFPSAVYRATT
KVVLIPAPKEGAGMRAVALRDVDLVQWCADALTQLAGIPERNMRGEDVITR
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgagcccaaaagcttcccagtctgctgtgtctaatgccgattcggccggatcctccaca
accatcaacgctaaaatacccagtttggccggtgttttgcgcgcagctgcgcgagattcg
aagctccggggtgtggtgacgcatatcggagaaccgacattgcatatgcaggcgccggag
ggggtgtggccattcatcgccggaaccattgcacagcatgctccattattggtggtgact
gcttctggtcggcaggcagatgacttaggggtggctttgcgcgccatgttaggtgatgtg
gtggaggtgttcccggcgtgggaaacgttgccccatgagcgcctgagtccgggggtggag
accgtctctcaacgcatgcgcgtaatgcgtcggcttagtttggctcgctctggtgagagc
gacgccactactccgcctctacgggtagtcgtggcgcccacgcgatccttggtacagccc
attcaggaacacctgggtgaggtagaaccaatccgtttgctcgaaggtgaggaaatcgat
ttcgaacggctgcaggaacggctagtcctattcggttactctcccgtggatgtcgtggct
aagcgtggtcatttcgcagttcgcggtggaattgtggatattttccctgccacagaggag
ctgccggttcgtgtggagttttggggtgatgaggtttccgaggtacgtgctttttccgta
ggagaccagcgcactatccccggtcagattgagcgagcaatcaatgtgtatccgtgccgt
gaactattgttaaccgattcggtgacgaagagagcggcagagctttctgtggaacgcgca
agtaacccagaactggcggatctgctggataagatcagtcaaaagatcgccgcgcctggg
atggagtctttgatacctgtcttacatgatggcccgcttgtgacgttgccggaattgatg
ccagagagaactcacacactgatcacggcacctgcacgggtgtatcgacgcgcccaggat
cttatcgagactggtcggcagttcatggaggccggatgggatattgcggctatgggcggg
gcagctccgatggaaggtgtggcgtatctcgacgtgaatgaggttcgggatgctcagcat
gactgcccgtggtggactttgtcgccaatggggatggcggatgcggataacggcttcgcg
tcagatgttctggagctcgactaccagccagcgccagcaccacatggggatctggatgct
attggcgcgttgatgggggagatccggcgtcgggtcgaaggaggcggccgggtagccttc
gctgcgccgacgccaacagtggcaggccggatgttgcgtcgaatgaaagaagccggcatc
catgccgaggctatcggggtggatcttaaggggcagcggggcttaggacgcgtgagacaa
agtgccttcacatgcgcggatgaacctgccgctggaaccgtgagtatctatcatgcggtg
agccacgccggtgtagatttcccatttgccggggatgacagtcaaccgcccatgttgttc
ctgacagaaacggacctcacgggtaatcgcgtggaggctgcggccactggtcggcgcaaa
ccggctaagaagcgtaaccgggtggatcctttagctttggaaccgggtgacttggtggtg
catgacagtcatggcatcggcaagtttataaagatgactgagcgtacagtcgggcgggga
gcggatgcatctcgtcgtgaatacctggtgctggaatacgccccgagcaagcgcggcggt
ccgggcgatcagctctacgttccgatggatcagctagacatgctgtcccgctatgttggc
ggggagcggccagcgctgtcgaagatgggcggcgcagattggaagagtacgaagcgtaag
gctcggggagcagtgcgtgaaattgctgcggagttggtgcagctttatgcgcagcgccaa
gctgcaccgggttacgcttttgcgccggattccccgtggcagcgggagatggaagaagcg
ttcccctacaccgaaaccgaggatcagtggaatgccatagaggctgtgaaagcagatatg
gagaaggctgtgccgatggaccgcgtgatcattggtgacgtgggctacggcaagacggag
gttgccgttcgtgccgcttttaaggctgttcaatcgggtaaacaggtggcggtgttggtg
ccgactactctcttggcgcagcaacactacgccaccttcactgaacgcatgcaggatttt
ccgacgaccattcgggagctgtcccgttttaccggccccaaggagtctaaggatgtgctg
aaaggcatggccgatggcacggtggacatcgtgatcggcacgcatcgtttgctgcaaacg
ggagtgcagtggaaggatctggggctcatcgtggttgatgaggaacagcgttttggcgtc
gagcataaggaacacatcaaggcgctgcgcacccatgttgatgtgctgaccatgtcggcc
acccctatcccgcgtacgctggagatgtcgatggcgggtatccgggagatgtcgacgatt
ttgacccctcccgaggatcgtcaccccgttttgacctacgtgggaccacaagaaaataag
cacgttgccgcggcgattcgacgtgagttactgcgcgatgggcaggttttctacgtgcat
aaccgggtgaaagatattgagaaggtggccggtgacatacgcgcgatggtgccggaagcg
cgtgtggttgtggcacatgggcagatgtccgaggaacaactggagactacggtcaaaggc
ttttgggatcgcgagttcgatgtgctggtgtgtaccacgattgtggagacgggccttgat
atatctaatgccaacaccctcatcgtggagaatgcacaccacatgggcttgtctcagttg
caccagctgcgcggccgcgtggggcgttcgcgcgaccgtggctatgcgtatttcctctat
ccgaagggcgaggtattgacggaaacgtcatatgaccgcctgtctactatcgcggctaat
aacgatttgggtgcaggtatggccgtagcaatgaaggatctagagatgcgaggcgcgggc
aatgtgctgggagcagaacagtctggacatattgccggagtgggttttgatctttacgtc
cgcttggtgggagaggctgtggaggccttccgtgcgatggccgatggagaagtggttgat
ggccgcgaggaggaaaagaaggagatccgtgtagatctgcctatcgatgcgcatatcccg
tcggagtacgtggcatcggaacgcctgcgcttggaggcttatcgcaagtttgctgaggtg
gagaccgatgaagacgtcgtgaaggtactggatgagctccaggatcgctatggtgagtcc
ccgcagcaggtgatgcaccttgctgctgtatcgagattgcgcatgttgtgccgtgatctc
aaagttggcgaggtggtgcaggcaggtacgaaaataagcttcagtcctatcgaacttgct
gattctggccaagttcggctcaagcgtttgttcccttccgcggtgtaccgggcgacgacg
aaagttgtgctaattcctgctcccaaggaaggagcggggatgcgtgccgtggctctgcgt
gacgtggatttggtccagtggtgcgccgatgccttgactcagttggctggcattccggag
cgaaatatgcgcggcgaagacgtgattacccgctag
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