Kaistella antarctica: NCTC13489_00201
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Entry
NCTC13489_00201 CDS
T06886
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cant
Kaistella antarctica
Pathway
cant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13489_00201 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cant03019
]
NCTC13489_00201 (cshA)
03009 Ribosome biogenesis [BR:
cant03009
]
NCTC13489_00201 (cshA)
Enzymes [BR:
cant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13489_00201 (cshA)
Messenger RNA biogenesis [BR:
cant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13489_00201 (cshA)
Ribosome biogenesis [BR:
cant03009
]
Prokaryotic type
rRNA helicases
NCTC13489_00201 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UTP25_NTPase-like
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
VEH95587
UniProt:
A0A3S4UPC2
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All DBs
Position
1:223466..225271
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AA seq
601 aa
AA seq
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MNLFTETNLSPEVLQAVGELGFVSPTEIQKQTIPFISTDTRDLIALAQTGTGKTAAFTLP
ILDMIDDGSRKIQLLVLCPTRELCLQITKDIINYSKYLKNIKTTAVYGGSSITDQIRSLR
EKPQIIVGTPGRVIDLINRKVLDFSAIQWLILDEADEMLSMGFKEDLATILRETPETKQT
LLFSATMNKEVERISKNYLTNPHRIVVGSLNEVKKNIKHEYYVVGYRNKKEALKRLIDAN
PNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISISLIKPEESRKLKQIKQS
TKIEIVEKKIPTGKVIIEAQVAGVFEKLFTEHENLVEFDDELIPDLSAFTKEELVHQMLQ
LQLRDMALYYKDKDDLVDQKFSEDRGGDRGRDRGRDRDGRGRDRDRGDRRDSGSRDGGNR
FSNNRDGGSRDFGRDGGNRDSRDRDGGNRGESRDRKPRRNSEDMVRFFFNLGKRDNLKKI
DMLEIINKSTEKSRKRPDIGNIEILEKFSFFEVEKSFKDEVLKGLETQKFKGKDMRAEES
N
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatctaagccctgaagttttacaggcagttggcgaactg
ggctttgtaagcccaacagaaatccaaaaacagactattccttttatctctacagataca
cgcgatctaatcgcacttgcgcagacggggacaggcaaaacagcagcgtttacgcttccg
attttggatatgattgacgacgggagtcgcaaaatccaattattggtgctttgtccaacc
agagaactttgtttgcaaattaccaaagacattatcaattactcgaaatacttgaaaaac
atcaaaactacagcggtttatggtggtagcagtattactgaccaaatcagatctcttcgc
gagaaaccacaaattattgtgggaactccaggaagggttattgacttgattaacagaaag
gtccttgacttttcggcaattcagtggttaattcttgatgaagctgatgaaatgttatca
atgggtttcaaagaagatttggcaacaattctacgtgaaactccagaaacgaaacaaact
cttttgttctcggcgacgatgaataaagaggttgaacgaatttctaaaaattatttaacg
aacccgcaccgtattgtggttggttctttaaatgaggttaagaaaaatatcaagcacgaa
tattacgtggttggttacagaaacaaaaaagaagctttgaaaagattgattgatgcaaat
ccaaatcaatactcgattcttttctgtcgtacccgtatggaaactcaggaagtcgcagac
tttttgatgcaaaatggttatgctgctgatgcacttcacggtgatttatcgcaggcacaa
cgtgatacggtgatgaaaaaattccgtttgaaaaatatcgatattttagttgcgactgat
gttgcggcgagaggtttagatgttgattcattaacacacgttattcacttctctttacca
gatgatccagaagtatttgttcaccgtagtggtcgtacaggtcgtgctgggaaagatggg
atttcaatttctttaattaaacctgaagaatcaagaaaattaaagcagattaaacaatct
actaagattgaaatcgtagagaagaaaattccaactggaaaagtaattatcgaagctcag
gttgctggtgtttttgaaaaattatttacggaacatgaaaatcttgttgaattcgacgat
gagttgattcccgatttatccgcttttaccaaagaagaattggttcaccaaatgctacaa
ttgcagttgagagacatggcgctttattataaagataaagacgatttggttgatcaaaaa
ttcagcgaagatagaggaggcgaccgaggtagagatcgtggcagagaccgcgatggtaga
gggagagaccgcgatagaggcgaccgaagagatagcggaagcagagacggcggaaaccga
ttcagcaataaccgcgatggtggaagccgtgatttcggacgtgacggtggaaaccgtgat
tctagagatagagatggtggaaacagaggtgaatctagagatagaaaaccaagaagaaat
agtgaagacatggttcgatttttctttaatttaggaaaaagagacaatttgaaaaaaatt
gacatgttggaaatcatcaacaaatcaactgaaaaatctagaaaaagaccagatatcggt
aatatcgagattttagaaaaattctctttctttgaagtggaaaaatcatttaaagacgaa
gttcttaaaggattagaaactcagaaatttaaaggtaaagacatgagagctgaagaatct
aactaa
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