Kaistella antarctica: NCTC13489_00210
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Entry
NCTC13489_00210 CDS
T06886
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cant
Kaistella antarctica
Pathway
cant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13489_00210 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cant03019
]
NCTC13489_00210 (rhlE_2)
Enzymes [BR:
cant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13489_00210 (rhlE_2)
Messenger RNA biogenesis [BR:
cant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13489_00210 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
AAA_30
P-loop_SecA
HEM4
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEH95623
UniProt:
A0A3S5EUE4
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All DBs
Position
1:complement(232232..233485)
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AA seq
417 aa
AA seq
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MNFTDLNLIDPIAKALTEEGYTQPTPIQQKSIPHILQGRDLLGTAQTGTGKTAAFAIPIL
QNLALKNQKNNHIKVLILTPTRELAIQIDESFKSYGRHLKLRHLVVFGGVKQAAQENSLR
RGVDILVATPGRLLDFISQGIISLKNLEVFVLDEADRMLDMGFVHDVKRIIKLLPAKRQT
LFFSATFPEEINKLASSMLTNPIQVEVAPVSATADTIQQKVYFVDKDNKLDLLTHILQQD
IKESVLVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALTNFKSGKTRILVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGSEGSSISFVDGLDLLNLKNTEKL
IGKKIPVEKEHPFHTENLVAEKRDSNNKPFRPRPPQGNSSSSHSKKPNNKSNFSRGK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttaccgacttaaacttaattgatcctatcgcaaaagcgcttacggaagagggt
tacacccaaccaacacctattcaacaaaaatcgattccacatatcttacaaggcagagat
ttattaggaactgcccaaacaggaaccggaaaaacggccgcctttgcaattcctattttg
caaaacttagccctgaaaaaccaaaaaaacaaccacatcaaagttttgattcttacgcct
acgcgtgaattagcaattcaaattgatgagagttttaaatcgtacggaagacatttaaaa
ctgagacatctcgtagttttcggtggtgtaaaacaagctgcacaggaaaactccctcaga
agaggcgttgatattttggtagcaactccaggaagattattggattttatctcccaagga
attatttcattgaagaatctagaagttttcgttttagacgaagccgacagaatgctcgat
atgggatttgtacacgatgtaaagagaatcatcaaattactacccgcaaaaagacaaaca
ttattcttctcggctacgttcccagaagaaattaataagctggccagttcaatgcttacc
aacccaattcaggttgaagtagcgcctgtttctgcaacggctgataccattcaacagaaa
gtatatttcgttgataaagacaacaaactcgatttgttgacgcacattctacagcaagat
attaaggaatctgttttggtattctcgagaaccaagcacggcgctgacaaaatcgcccgt
aaattgcaaagtcataaaatttctgcagaagcgattcacggaaataagtctcaaaatcaa
agacagaacgctttaacaaattttaaatctggaaaaacaagaatcttggttgcgactgat
attgcggccagaggaatcgatatcgatgaattaaaatacgtagtgaatttcgaattatct
gatgtttctgaaacgtacgttcaccgaatcggtagaactggaagagcaggttcagaagga
agttcaatctctttcgttgatggtttagatttgctgaatctgaaaaataccgagaaatta
attggtaaaaaaattccagttgaaaaagaacatcctttccatactgaaaatttagttgcg
gagaaaagagattctaataacaagcctttcagaccaagaccgccgcaaggaaattcaagc
agcagtcatagtaagaagcctaacaataagagtaatttttcgagaggaaaatag
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