Kaistella antarctica: NCTC13489_01485
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Entry
NCTC13489_01485 CDS
T06886
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cant
Kaistella antarctica
Pathway
cant02020
Two-component system
cant02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cant00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCTC13489_01485
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC13489_01485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cant03021
]
NCTC13489_01485
Transcription machinery [BR:
cant03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC13489_01485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
VEH99336
UniProt:
A0A448NR78
LinkDB
All DBs
Position
1:complement(1612798..1614273)
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AA seq
491 aa
AA seq
DB search
MLKQNFQLRLGQKLAPQQIQLMKLIQLHTLEFEEELERELEENPALEKVKEENKEDEFSS
DDSFEEEGNESIDTDFDVNDYIFDDEPAYKSSANNYSADDEEFDNQALLTEGQSLYDYLL
EQIYLANIDNDDLKIAEYIIGNLDNDGYLRREVKQLVDDLAFSQSLVTTPEKVTEILENY
VQKLDPSGVGARGLQECLLLQIEKKVSGDKSVTLAATILRNQFDALTNKHYNKIIQKYDI
EEEDLKDALDVISNLSPRVGGNFDTQTITINQEIIPDFLITVKDNGPRGVDVIPSLNSKN
APSLRVSDEYKDILTTYSHDKKSAEHKQAALFIKQKLDAAKWYIDAINQRQNTLLQTISA
IVKLQKEYFITADDKSLKPMILKDVADITGFDISTISRVVKSKYADTPNGIVYLKSLFSD
SLTNDDGEEVSTKEIKTHLMDIIDAESKRKPYTDDALVGLLKEKGYNIARRTIAKYREQL
NIPVARLRKEL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacaaaactttcaattgcgcctcggtcagaaattggctccacaacaaattcaa
ttgatgaagttgatacaactacatacgctggaatttgaagaagaattggagcgggaactg
gaagagaatcctgcgctggaaaaagtgaaggaagaaaataaagaagatgaattttcaagc
gatgacagttttgaagaggaaggcaacgaaagtatcgacaccgatttcgacgtaaacgat
tatatttttgatgatgaacccgcttacaaatcatctgctaataattattctgctgacgac
gaggagtttgataatcaggcactcttgacagaaggacaatctttatacgattatcttctg
gaacaaatttatttggccaatattgataacgatgatttaaaaatcgctgaatacattatt
ggaaaccttgataacgacggctatcttcgtagagaagtgaagcagttggttgacgattta
gccttctcccaatcgctggttaccacgccagaaaaagtgactgaaatcttagaaaactac
gttcaaaaattagatccgtctggcgttggcgctagaggtttacaagaatgtcttttatta
cagatcgagaaaaaagtcagtggtgataaatcggttactttagcagcgactattttgaga
aatcagtttgatgctttgacgaacaaacattacaacaagattattcagaaatacgatatt
gaagaagaagatttgaaagacgcattagatgtaatttcaaacctgtcgccccgagttggt
gggaatttcgatacccaaacaattaccattaaccaggaaattataccagatttcttaatc
accgtcaaagacaatggtccaagaggcgttgatgtaattccttctttgaatagcaaaaat
gcaccttcgctgcgagtttcagatgaatacaaagatattttaaccacttattctcacgac
aaaaaatcagctgaacacaaacaagcagccttgttcattaagcagaaattagatgcagcg
aaatggtatatcgatgctattaaccagcgtcagaacactttgttgcaaacgatttcagcg
attgtaaagttgcagaaagaatatttcattacggccgatgacaaatcattgaaaccgatg
attttgaaggatgttgcagatattactggttttgatatttctacaatttctagagtggta
aaaagcaaatatgccgatactccgaacggaattgtttatttgaaaagtttattctctgat
tcattgaccaacgatgatggcgaagaggtttctaccaaagaaattaaaacccacttgatg
gatatcatcgatgcggagagcaaaagaaaaccgtataccgatgacgcattggtaggtctt
ttaaaagaaaaaggttacaatattgcccgacgtacgattgcaaaatatcgtgaacagttg
aatattccggtagcgcgtttgagaaaagaattgtaa
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