Kaistella antarctica: NCTC13489_02166
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Entry
NCTC13489_02166 CDS
T06886
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cant
Kaistella antarctica
Pathway
cant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13489_02166 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cant03019
]
NCTC13489_02166 (rnr)
03016 Transfer RNA biogenesis [BR:
cant03016
]
NCTC13489_02166 (rnr)
Enzymes [BR:
cant01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC13489_02166 (rnr)
Messenger RNA biogenesis [BR:
cant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC13489_02166 (rnr)
Transfer RNA biogenesis [BR:
cant03016
]
Prokaryotic type
tRNA degradation factors
NCTC13489_02166 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
OB_HELZ2
DUF1918
Motif
Other DBs
NCBI-ProteinID:
VEI00550
UniProt:
A0A3S4WTL9
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All DBs
Position
1:complement(2347368..2349521)
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AA seq
717 aa
AA seq
DB search
MAKGKYFSDKNNHKLQEIGRLILGFMNDKSGKIYNYKQIADGIDYKNPRQRELVIQSIHK
LLSDQRIKEVEKGKYIINLKIEGTLSGTIDFNQTGNAYVKVVGLDDDIFIHSKNVKDALQ
GDTVLIVTYKFKGKKMEGSVLEVMERKRDQFVGTFQFIKHKDFGFVVGDKKHINTDIFVP
QGKIGGAKDGDKVVVKMTAWRAGEKNPEGEIISVLGAPGEHETEIHSILAEYGLPYEFPE
EVEREAQEIDRRIHEDEVAKRRDMRGVCTFTIDPKDAKDFDDALSIQKLDNGNWEIGVHI
ADVSHYVVPGTILDAEAYKRATSVYLVDRVVPMLPEVLSNDVCSLRPNEEKYTFSAVFEI
DDNAEIKSEWFGKTITYSDRKFAYEEAQERIETEEGDLAEEILALDRLAKILRKARIENG
AITFDRSEVRFNLDENSQPIGVYFKVSKDSNHLIEEFMLLANRKVSEFISLNKKGSPTSN
TFIYRVHDDPDPAKLEALRDFVGTFGYTMNLANTKKVAESLNKLLADIQGKGEENMIETL
AMRSMSKAVYSTDPIGHYGLGFEYYSHFTSPIRRYPDLIAHRLLQHYLDGGKSPQKQEYE
DKCKHCSAMEKLASDAERDSIKFMQVKFMEQHLGEDFTGVISGVADFGFWVQIPENGAEG
LIKLRDLMDDSYSYDQKNHAVYGSKTGNKYQLGDEVTIRVMKANLIQKQLDFKIIQP
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaggaaaatatttctcggataaaaataatcataaattgcaagaaatcggacga
ctgattttaggttttatgaacgataaatccggtaaaatctataattacaagcaaattgca
gacggtattgactataagaatccaagacaacgggaattggtcatacagtcgatacataaa
ttgctttctgatcaacgaataaaagaagttgagaaaggaaaatacattattaatcttaaa
atcgaaggaacgttaagtggaaccatcgattttaaccaaaccggaaacgcttatgtaaag
gtggttggtttagatgatgatatttttattcattctaaaaatgtaaaagatgcgctccaa
ggcgataccgtacttattgttacctataaatttaaaggtaaaaaaatggaaggttcagtc
ttagaagtaatggaaagaaaacgcgatcaattcgtgggtacttttcaattcatcaaacac
aaagatttcgggtttgttgtaggcgataaaaagcatattaacactgatatttttgttcca
caaggtaaaattggtggtgcaaaagacggtgataaagtcgtcgttaaaatgactgcttgg
agagctggagagaaaaatcctgaaggtgaaattatctcagttcttggtgcaccaggtgaa
catgaaacagaaatacattcaattttagccgaatatggcttgccttatgaattccccgaa
gaagtagaaagagaagctcaggaaatcgatcgtagaattcatgaagatgaagttgcgaaa
cgacgtgatatgcgaggagtttgtacttttaccattgacccgaaagatgcaaaagatttc
gatgatgctctttcgattcaaaaattagataatggaaactgggaaataggagttcatatt
gccgatgtttcgcattatgttgtgccaggaacaatccttgatgcagaagcatataagcgc
gctacctcagtctatttggtcgatcgtgtggttcccatgttacctgaagttctaagtaac
gacgtatgttcgcttcgaccaaatgaagaaaaatataccttttcagccgtcttcgaaatt
gatgacaacgctgaaattaaaagcgaatggtttggaaaaacgatcacatattctgatcga
aaattcgcatatgaagaagcacaagaaaggattgaaacggaagaaggtgatttagctgaa
gaaattttggcacttgatcgcttagcgaaaatcttaagaaaagcccgtattgaaaacggt
gctattacttttgatagaagcgaagttcgttttaatttagatgaaaatagccagccaatt
ggtgtttattttaaagtcagcaaagattctaatcacttgattgaagagtttatgttgctg
gccaaccggaaagtttctgaatttatttctttaaataagaaaggatctccgaccagtaat
acctttatttatagagttcatgatgatccagatcctgctaagttagaagccttgcgagat
tttgtaggtacttttggttataccatgaacttagcgaataccaagaaagtagctgaatct
ctcaataaattattagcagatattcaaggaaaaggcgaagaaaatatgatcgaaaccttg
gcaatgcgttcgatgagtaaagcggtctattctactgaccctatcggacattacggtctc
ggcttcgaatattattcgcacttcacctctcctattcgccggtatccagatttaattgct
catcgtttgttgcagcattatttagatggtggtaaatctcctcaaaagcaagaatacgaa
gacaaatgcaagcattgcagtgcgatggaaaaactggcttcagatgccgaaagagactct
atcaagtttatgcaggttaagttcatggagcagcatttgggcgaagatttcacgggtgtt
atttctggcgttgctgatttcggattctgggttcaaattccagaaaatggtgcagaagga
ctaattaaattgagagatttgatggatgactcttattcctatgatcagaaaaatcacgct
gtttatggcagcaaaactgggaataaataccaattaggtgatgaagttacgattagggta
atgaaggccaatctcattcagaaacaattagattttaaaatcattcaaccgtaa
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