Magallana angulata (Portugese oyster): 128155639
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Entry
128155639 CDS
T09348
Name
(RefSeq) exosome complex component RRP43-like
KO
K12586
exosome complex component RRP43
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128155639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128155639
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
128155639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
128155639
NCBI-ProteinID:
XP_052673410
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All DBs
Position
7:11015944..11026176
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AA seq
284 aa
AA seq
DB search
MQEEFGITTKMAEDFRTARPKEYYRKFLEQEVRPDGRELGETRTTVINVGCLSTANGSAL
VKMGNTTVMCGIKAECAKPKTEEPALGFIVPNVELSPMCSPQFRPGMPGEQARVLSQFML
EVMKNSNCIDVKKLCIKPGRLVWTLYCDIVCLDYGGNVTDACVLSLLAALNNTVLPNVVL
NKDTDKFEAFPDQSTTLQLQSSPVSSTFAIFDDEILFVDPTAEEENLATGQLTIVTTDDK
LCMVHKPGGTPLTDQQLCLCIKQAFERTKEVLRLIDDTISSVER
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaagagtttggtataacaacaaagatggcggaagatttcagaactgcaagacca
aaagaatattatcgaaaatttttggaacaagaagttcgaccagatgggagagagctgggg
gagacacgtacaacagtcatcaatgtcggatgtttgtccactgctaatggatcagcgctg
gtaaaaatgggaaatacaacagtaatgtgtggaatcaaagctgaatgtgcaaaaccaaaa
acagaagaacctgcacttggattcattgttccaaacgtagagttgtcccccatgtgttca
ccacagtttcgcccgggaatgccaggagaacaggcccgagtgctgagtcagtttatgctg
gaagtcatgaaaaactcaaattgcattgatgtcaagaaattgtgtattaagcctggcaga
ttggtgtggaccttgtattgtgacatagtgtgcctggactacggtggaaatgtcacagat
gcctgtgttttgtcattgctggcagccctcaataatactgttttaccaaatgtggtattg
aataaagacacagacaaatttgaagcttttcctgatcagtccacaacattacagctgcag
tctagtccagtgtcttccacattcgcaatatttgatgatgaaattttgtttgtcgaccca
acagctgaggaagaaaacctggcaacaggccaacttacaatagttacaacagatgataaa
ctgtgtatggtccataagccgggtggtacccctcttacagaccagcagctgtgtttgtgt
attaaacaagcctttgaaagaacaaaagaagttttaagacttattgatgatacaatatca
agtgttgagaggtag
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