Magallana angulata (Portugese oyster): 128156175
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Entry
128156175 CDS
T09348
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03013
Nucleocytoplasmic transport
canu03015
mRNA surveillance pathway
canu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128156175
09122 Translation
03013 Nucleocytoplasmic transport
128156175
03015 mRNA surveillance pathway
128156175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128156175
03041 Spliceosome [BR:
canu03041
]
128156175
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128156175
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128156175
Spliceosome [BR:
canu03041
]
Complex C
Other components
EJC/TREX
128156175
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128156175
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
128156175
NCBI-ProteinID:
XP_052674172
LinkDB
All DBs
Position
7:46733689..46738082
Genome browser
AA seq
426 aa
AA seq
DB search
MADNENETELLDYEDDETETTADGTGDAPVKKDVKGTYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAH
TRELAFQISKEYERFSKYMNNVKIAVFFGGMSIKKDEDVLKKNCPHIIVGTPGRILALCH
SKVLNLKNVKHFVLDECDKMLAALDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRAVCKR
FMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRCM
ALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNEVQERFEVNITELPDEIDIS
SYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatgagaacgaaactgaacttttagactacgaagatgatgaaaccgaaacc
actgcagatgggactggtgatgcaccagtaaagaaagatgtgaagggaacatatgtatcc
attcacagttctggattcagagattttcttctgaaaccagagttgctcagagccattgta
gactgtggatttgagcatccttctgaagttcagcacgagtgtattcctcaggctattctg
tccatggatgtcctttgtcaggccaagtctggtatgggaaagacagctgtgtttgtgttg
gccacactgcagcaactggaacctgttgatggtcaggtatcagtgttggtactagcacac
accagagaattagctttccagatcagcaaagagtatgagagattcagcaagtacatgaac
aacgtgaagattgctgttttctttggaggaatgtccatcaagaaggacgaggatgttctg
aagaagaattgcccccacattattgttggtacacctggtagaattctagccctctgccat
tccaaagtcctcaacctgaagaatgtcaagcactttgttcttgatgaatgtgacaaaatg
ttggcagctcttgacatgaggagagacgtccaggaaatcttccgcaacaccccccatgaa
aagcaagtgatgatgttcagtgctacacttagcaaggaaattcgagcagtctgcaagaga
ttcatgcaagatccaatggaggtctacgtggatgacgattccaaactgactctccatggt
ctccaacagcactatgtcaaactgaaggacaatgagaaaaacagaaagctgtttgaactg
ttggatgttctggaattcaaccaggtcattatctttgtgaagtcagtgcagagatgtatg
gctctggcacagctgctagtagagcagaatttcccagcaattgcaatccacagagcaatg
acacaggaagaaagattgtcccggtatcagcaattcaaagacttccagaagagaatactg
gtggccacaaacctgtttggtagaggaatggacattgaaagagtcaacatcgtatttaac
tatgacatgccagaagactctgacacttacttgcacagagtggctcgtgcaggtagattt
ggaacaaaaggtcttgctataacatttgtatcagatgaaacggatgctaaagtactaaat
gaagtacaagaaagatttgaagtaaacatcacagagctgccagatgagattgatatatct
tcgtacattgaaggacgttga
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