Magallana angulata (Portugese oyster): 128156430
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Entry
128156430 CDS
T09348
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128156430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128156430
03041 Spliceosome [BR:
canu03041
]
128156430
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128156430
Spliceosome [BR:
canu03041
]
Complex B
Other components
Prp19-related factors
128156430
Complex C
128156430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
Mad3_BUB1_I
ARM_TT21_C
ARM_TT21
RPN7
PPR
NRDE-2
Motif
Other DBs
NCBI-GeneID:
128156430
NCBI-ProteinID:
XP_052674539
LinkDB
All DBs
Position
7:19715439..19724010
Genome browser
AA seq
854 aa
AA seq
DB search
MTIEMPESGETADKKQNDLFFEEDDLPFEEEILRNPYSVKSWLRYLEYKKEAPRSTVNLI
YERALKELPGSYKLWYNYLKLRRRQVKGRCLNDPAIEDVINAHERALVFMHKMPRIWIDY
CQFLVDYSRITKTRRTFDRALRALPITQHHRIWPRYLKFVRLYDLPETAIRVYRRHLKLQ
KENTEEYIDYLMKIGWLDEAANKLVDIINDDSFVSRAGKSKHQLWNELCDLVAKNPDKVT
SLKIEPIIRQGLKRYTDQIGVLWNSMADYYIRGGHFERARDIYEEAIMTVITVRDFTQVF
DAYAQFEKNLISSKMESMEETGASEEDDLELELRLARLENLMERRPLLLNSVLLRQNPHN
VHEWHKRVKLFEGKPREIINTYTEAVQTVDPKLASGKPNTLWVEFAKFYEKAGQIEDARI
IFDKAVRVPYKHVDDLASVWCEWAEMEIRHENNEEALKLMQRATTPPSRKVSYHDENETV
QSRVHKSLKVWSLYADLEESFGTFKTCKSVYDKIIDLRIATPQIVMNYGLFLEENNYFEE
AFKAYEKGIALFKWPNVYDIWNTYLTKFMERYGGSKLERSRDLFEQCLENCPAKFAKSFY
LLYAKLEEEHGLARHAMAVYDRATKAVLPEEQNEMFNVYIKRAAEIYGVTYTRPIYEKAI
EVLHDEQARSMCLRFADLERKLGEIDRARAIYAHASQIADPRVAANFWQVWKEFEIKHGN
EDTVREMLRIKRSVQAIYNTQVNFMSAQMLAASSGKGDNAGESSDNMQKLEERARQLAEE
SVKDQAKPDKGILFVRSDNTQEELGELAKTANPDAIDIDDDFSSDEEAQVEEMEVKSVPT
EVFGSLKNEEEEED
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgactatcgagatgcccgaatcaggagaaactgcagataaaaaacaaaatgatttattt
tttgaagaggatgacttgccatttgaagaagaaattcttcgtaacccatactctgtgaag
tcatggttgagatatttggagtataagaaagaagcacccaggagcacagttaatttgata
tatgaaagggctctgaaagagcttcctggaagctataaactatggtacaattacttaaaa
ctacgaagaagacaagtcaaggggcgttgcctaaatgatcctgccatagaagatgttata
aatgcccatgagagagcacttgttttcatgcacaagatgcctagaatttggattgactac
tgtcagtttttggtagactacagtagaataacaaaaacaagacgtacctttgatagagct
ctcagggctctcccaatcacccagcatcacaggatctggcccagataccttaagtttgta
cgattgtatgacttaccagaaacagctattagagtgtacaggaggcatttaaagctacag
aaggagaatacagaagagtacatagattacttgatgaagattggatggctagatgaagca
gccaacaaactggtggatatcatcaacgatgattcctttgtgtcaagggccggcaagtcc
aaacaccagctgtggaatgagctttgtgatcttgttgctaagaacccagacaaggtaacg
tcactgaagatagaacctatcattcggcaaggactgaagagatacacagatcagattggt
gtcttgtggaactctatggctgattattacattagaggaggtcattttgaaagagctcgg
gacatttatgaggaagccattatgactgtgatcactgtaagggatttcacccaggtgttt
gatgcttatgctcagtttgagaagaacttgatcagttctaagatggagagtatggaagaa
acaggtgcttcagaagaagatgacttagaattggagctgagattagcaaggttagagaat
ctgatggaaagaagaccacttctgttgaacagtgttcttctgaggcaaaacccccacaat
gttcacgaatggcacaaaagagtcaaactgtttgagggaaaaccaagagagataatcaac
acttacacagaagctgttcagactgttgaccccaaacttgcatcaggaaaaccaaatact
ttgtgggtggaatttgccaaattctatgaaaaagccggacagatagaagatgcaagaatt
atatttgacaaagcagtgagagtgccctacaagcatgtggacgatttagcttctgtgtgg
tgtgagtgggcagagatggaaatacgacatgaaaataatgaagaagctctgaagttaatg
caaagagctaccacgccaccatcaagaaaagtatcctaccatgatgagaatgaaactgtt
cagagtagagttcataaatcactgaaggtgtggtcgctgtatgcagatttggaggagagc
tttggaacttttaagacgtgcaagtcagtttatgataaaatcatcgacctgcgaattgcc
actccccagattgttatgaattatggtctgttccttgaagaaaacaattactttgaggag
gccttcaaggcatatgagaagggaatagcattgttcaagtggccgaatgtatatgacata
tggaatacctaccttacaaagtttatggaacgatatggtggctcaaagttggagagatct
cgagatttgtttgaacagtgcttggagaattgtccagccaagtttgctaagagtttctac
ctgctgtatgccaagcttgaggaggagcatggcctggccagacatgctatggctgtatac
gaccgagcaacgaaagctgtgttacctgaggaacaaaacgagatgtttaatgtgtacatc
aagagagctgcggagatttatggtgtcacctacacaagacctatctatgagaaagccatt
gaagtgttacatgatgaacaggcccggtcaatgtgtttgcggtttgctgatttggaaaga
aaacttggagaaattgatcgagctcgagccatctatgctcatgcctcgcagattgctgat
cctagggtggcagccaatttctggcaagtttggaaagagtttgagatcaagcatggaaac
gaggacactgtgagagaaatgctccgaattaaacgctcagtacaagccatctataacaca
caggtcaactttatgtctgcacagatgttagcagcttcaagtggaaaaggagataatgca
ggagagagtagtgacaatatgcagaaactggaggagagagcaagacagttggccgaggaa
tctgtcaaagaccaggccaaacccgacaaaggcattctgtttgtcaggagtgacaataca
caagaagaactaggagagctggcaaaaactgccaaccctgatgctattgacattgatgat
gatttctctagtgatgaggaggcacaggtggaagaaatggaagtgaagtctgttccaact
gaagtttttgggtctctaaagaatgaggaggaagaggaggattga
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