Magallana angulata (Portugese oyster): 128158903
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Entry
128158903 CDS
T09348
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
canu
Magallana angulata (Portugese oyster)
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
canu03016
]
128158903
Enzymes [BR:
canu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128158903
Transfer RNA biogenesis [BR:
canu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128158903
Prokaryotic type
tRNA splicing ligases
128158903
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF3368
Motif
Other DBs
NCBI-GeneID:
128158903
NCBI-ProteinID:
XP_052677842
LinkDB
All DBs
Position
8:complement(28465636..28474697)
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AA seq
440 aa
AA seq
DB search
MKQIGNVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMSNKDAVVSPGGVGFDINCGVR
LLRTNLMEKDVAPLKEQLAQCMFDHIPVGVGSKGIIPMTAQNLEEALEMGMDWSLREGYA
WAEDKEHCEEYGRMLQADPGKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNKFAAKK
MGIECKGQVCVMIHCGSRGLGHQVATDALVAMEKAMKRDNIKVNDRQLACAKIYSQEGQD
YLKGMAAAANYAWVNRSSMTFLCRQAFAKMFDSTPDDLDMFMIYDVSHNIAKVEEHFVDG
KQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTQQGMDETYGT
TCHGAGRALSRAKSRRNLDYTEVLSALEEKGISIRVASPKLVMEEAPESYKNVTDVVDTC
HMAGISKKAIKLRPIAVIKG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaataggaaacgtggctgctctgcctggaatagtggggaaatcaatcggtctt
cctgatgtccattcagggtatggatttgctataggaaatatggccgcctttgacatgagt
aacaaagacgcagtagtctcgcctggaggggtggggttcgacattaactgtggggtccgc
ctgctccgtaccaatctgatggagaaagatgtggcccctctcaaagaacagctcgctcag
tgcatgtttgatcacatcccagttggtgtgggctcgaagggaatcattcccatgacagca
cagaatttagaagaggcattagaaatgggcatggactggtctctcagagaaggttatgcg
tgggcggaggacaaggagcactgtgaggagtacgggaggatgttacaggccgaccccgga
aaagtcagcagccgggccaagaaaaggggactaccccagttgggaactctgggagccggc
aaccattatgctgagatacaggtggtggacgagatctacaataagtttgccgccaaaaag
atgggcatcgagtgtaagggacaggtgtgtgtgatgatccactgtgggagtcgggggctg
ggccaccaggtagcaacagatgctctggttgctatggagaaggcaatgaagcgtgacaac
attaaagtcaacgacagacaactggcgtgtgccaagatttactcccaggagggtcaggac
tacctcaaaggaatggctgccgccgctaactatgcgtgggtcaaccgctccagcatgacc
ttcctctgtagacaggcctttgcgaagatgtttgacagtaccccagacgaccttgacatg
tttatgatttatgatgtgtcacacaacattgccaaagtagaggagcattttgtggacggg
aaacaaaagactttactggttcacagaaagggctccactcgggccttcccgccccatcac
cccctcattcctgtagattatcagctgactggacagcctgttttgattggaggaaccatg
ggaacgtgtagctacgtgctgactggtacacagcaaggaatggatgagacgtacggaacc
acgtgccacggagctggtcgagctttatcccgagccaagtctcggcgtaatctggactac
acggaggtcctgtcagctttggaggagaaaggaatcagtatcagagtggcttcacccaag
ctggtcatggaggaggcacctgaatcttacaaaaatgttacagatgttgtagatacttgt
cacatggcaggcattagcaaaaaggccataaagctacgtcctattgcggtaatcaaaggc
taa
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