Magallana angulata (Portugese oyster): 128165216
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Entry
128165216 CDS
T09348
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128165216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
canu03021
]
128165216
03019 Messenger RNA biogenesis [BR:
canu03019
]
128165216
Transcription machinery [BR:
canu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128165216
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128165216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCHC
zf-CCCH_3
zf-CCCH_2
zf-CCCH_RBM22
zf-CCCH_12
zf-CCCH_4
zf-C3H1
zf-C2H2_10
zf-CCHC_2
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
128165216
NCBI-ProteinID:
XP_052685459
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All DBs
Position
10:14106859..14110971
Genome browser
AA seq
289 aa
AA seq
DB search
MQDLVAPVTHIKFEMEVALDQQLGSQPLPFPGMDKSGAAICTFYLSNVCSKGVACPYRHV
KGDRTVVCKHWLRGLCKKGDDCEFLHEFDMSKMPECYFFSKFGECNNKECPFLHIDPSAK
IKDCPWYDRGFCRHGPNCKNRHVRRILCQCYLNGFCLEGPKCKYMHPSFDIPVFDQQTTT
KKVNIVCHFCSEPGHKALNCPKMKTSDSDKINVIQTTMDTGHNAPYPQPGYGHHVHVHLP
YKPPSGQDNYIDPRRPLDQVTCFKCGEKGHYANKCPKGHLAFLASSSVS
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatttggtagcgccggtaactcatataaaattcgaaatggaagtagctctagat
cagcaactagggtcacaacctcttccattccctgggatggacaaatcaggggcagcgata
tgtacattctacctaagcaatgtttgtagcaagggagttgcatgtccatatagacatgtc
aaaggagatcgaactgttgtgtgtaaacattggcttagaggtctgtgcaaaaaaggagat
gattgtgaatttcttcatgagtttgacatgagtaaaatgcctgaatgttacttcttttcc
aaatttggtgaatgtaataacaaagagtgccctttcctccacattgatccatctgcaaaa
atcaaagactgtccatggtatgacagaggattttgtagacatggtcccaactgcaaaaat
cgtcatgtcagaagaattctgtgccagtgctatctcaatggattttgtttagaaggaccc
aagtgtaaatatatgcatcccagttttgatattcctgtgtttgatcagcaaacaactacc
aagaaagtcaacattgtgtgtcatttttgctcagaacctggtcacaaagcactgaactgt
ccaaaaatgaaaacatcagacagtgataaaatcaatgttatacagaccacgatggacact
ggtcacaatgccccctaccctcagcctggatatggtcaccatgtacatgtacacctaccc
tacaagcccccatccggccaggataactatatagacccaagacgaccactcgaccaagtg
acatgttttaagtgtggagagaaaggacactatgctaataaatgtccaaagggccatcta
gcttttcttgcttcgtcctcagtcagctga
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