Magallana angulata (Portugese oyster): 128165239
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Entry
128165239 CDS
T09348
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
canu
Magallana angulata (Portugese oyster)
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128165239
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
128165239
3'-5' decay
Other 3'-5' decay factors
128165239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
ResIII
AAA_19
zf-C2H2_jaz
PAM2
zf-CCCH
PhoH
UvrD-helicase
Bac_DnaA
TPR_19
AAA_16
AAA_22
zf-C2H2_4
zf-CCCH_4
AAA_7
zf-C2H2
Dehyd-heme_bind
MOV-10_Ig-like
Motif
Other DBs
NCBI-GeneID:
128165239
NCBI-ProteinID:
XP_052685522
LinkDB
All DBs
Position
10:36410003..36448091
Genome browser
AA seq
1710 aa
AA seq
DB search
MDRDNLSETERHGQPPSIDHVLTLINSLVKEKNFQDALEHTNTALAKYEHNEKLQEKKIK
ILCHQGKFEEAFDLTKNWKEREPKNAVANKEFKKLKKVIQVLRDQDSEEENEEDEEEAVE
NNASVPASTTSPTHTTPSEPTPTPPHAAEPHPTTSKSEIEGACALHDEKDDEDFSCTFCD
IKFVSASELETHCRSDLHKKRITSDEDQNWKYRVPPRNLTSEEFTICRSVLDAELNRYEE
TRKCTFGDKCTQAHSKEELQEWKERFKFRTQQIKRARDKHLHGNTYAEQLMEKLVNAENS
KSVMIQNVEYAKVHVNSELKVNMTTKKCTNAWTFTITSKRSLHRVTLLDDTNRTYFYIAS
ISVGPKKTQKYQNLETHCQEWVNPDYTTRHSGEYVYRVKVVFKTDIYGTFRQTLVYDFGL
EPVLSREMQIESAPITDIEKLSKDLVLSEQGRWKVESVDLVPFENKPVPETEEEKQLLSK
YCLPEADKFRLSEHLMHPPTKETYRIWMHEMLYIEEWAQMDHISRYNIKTSLQLVNRFLL
VPGALSGAKYAQGGELFARMKLDDELSEDSAGGRLILMSSNVAWLAPFNPDDKMNSRQNK
KVYQVLLEDKGKNFIFLRLPEKCVSELNLTCDQEFHAEIQFQLNRVSMCEMHSAIDQLPT
LDLVFPPPQRIPSSPWFPEDMDFSETVNERLNEKQKAAIRGITAAGDKCLPPLLLVGPWG
TGKTYTLAQAAKHALEVEENRILICTHSNSAADLYIKDFIHPIVKEGHMEAVPLRIYYRH
RWVQTVPEVVLQYCLLEMSASQGNFRMPSREEVDKHRIIITTLKTARYLCDLDLPQGYFS
HIFVDEAAQALESETLIPLSLAGRTTKIILAGDHMQLNPEVYSDFAKQQGFQKSLLDRLY
ELYPDDCPCKIMLCENYRSHEAIIDFTSDLFYDSKLIPSGNQPAHPSYYPLTFFSTRGED
LQHENSTGFYNIAEVHEVVDRVDDLQKNWPPEWGEVEGNIGVVAPYSDQVFRIRGELRKR
KMQYVSVERVFNVQGKQFRAIILSTVRTRHTCSSDASQEDVYDYGFLSNVKLLNTALTRA
QSIVVVVGDPLSLCLVGKCRKVWEYFLETCNEHKSFFGLKFSVLKAQLNSAELRKTYVLN
PLAPEFVPNRLYHVTSQTNVGAGASGGPNAANPGYFLGQKMMYPGGPYSQQMYVPLPYQG
YYPPVMYRPYVSPFIGGGGVGGRGRVPARVIYPRQVPVNGSSTKSSSPAKSSGSDTERVA
SPDITRNTESPQGQGSVKKGQSSRSRAMVYVPRIPAPYPAMYYPYQPYPGYYYLPEDPRL
AQTHARYPYIAPGIPPQVYPHPYPAGPYIGTPIRPPQGGSPENTPSPGERSPNSQRSHSL
SPGPQRPPRSQSPAMSPNSAAAVAAAAAAAAAAGAGPHFQLLPNVKHIPAHLYTKAGSSA
GNSRSSTPLGGRDSPATERAGEEVRASFEHDYLKSVSPKLDLQERRASAQSPLARVISQR
QGYIRDELEAMTLHGGQRTHYQSIVTTTRSSSGSMQNGSRVMEKGRSNKKPSKLELHSTT
GFSRQFSEDITTPTEITNLVKMIDDNDDVDMETRQLTHQSYAAQKNTSGRLYLNIPSQQE
LAMGESASSSPPSGSPPLGDQKPTYAGVLRRRLPSAQGDIDPSLLEPMTPHTPLGFTTPG
TEIDTDPLGILRNLNINSSAENQRTYKYFS
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggatagagataacctgtcagaaacagaaaggcatggccagccaccgagcatagaccac
gtactgaccctcatcaacagcctagtcaaagagaaaaattttcaagacgctttagaacac
accaacactgccttagctaaatatgaacataatgagaaattacaagagaagaagatcaaa
atcctgtgtcaccaagggaagtttgaggaagcttttgatctcactaaaaactggaaggag
cgagagccaaagaatgctgtggccaacaaagaattcaaaaaattaaagaaagtcattcaa
gttttaagagatcaggattcagaagaagagaatgaggaggatgaggaagaggcagtagag
aacaatgcttctgtcccagcaagtaccacatcacccacacacaccacaccatcagaaccc
acccccaccccaccccacgcagcagaaccccaccccaccacatcgaagtcagagatagag
ggagcatgtgcactacacgacgaaaaggatgacgaggattttagctgtactttctgcgac
attaaatttgtgtcagccagcgagttagaaacccactgtcgcagtgacctgcataagaaa
cgaatcacatcagatgaggatcaaaactggaaatatagagtgccacccagaaacttaacc
agcgaggagtttaccatttgtcgcagtgttctagacgcggagttgaatcgttatgaagaa
accagaaaatgtactttcggtgacaagtgtacccaggcccactccaaggaagagctgcag
gagtggaaggaacgcttcaagttccggacacaacaaatcaaacgggcccgggacaaacat
ctccatgggaacacgtacgctgaacaactgatggagaaactggtcaatgctgagaactcc
aagtctgtgatgatacaaaatgttgagtacgctaaagtccatgtcaactcagagttaaaa
gtgaacatgacaaccaagaaatgcactaatgcctggaccttcaccatcaccagcaagaga
agtctgcaccgagtgaccttgctggatgacacaaatcgcacttacttctacatcgccagc
atttccgtgggaccaaaaaagacccagaagtaccagaatctggagacccactgtcaggag
tgggtcaacccagactacaccaccagacacagcggggaatacgtctacagggtcaaggtt
gttttcaaaacagatatttacgggacatttagacagaccctggtttatgactttggcttg
gagcctgttctgagccgagagatgcagatagagtccgcccccatcacagacattgagaaa
cttagcaaggaccttgtgctcagtgaacaggggcgctggaaagtagagagtgtggactta
gtcccctttgaaaacaagccagtacctgagacagaggaagagaagcagttgttatccaaa
tactgtttacctgaagcggataagttccgtttatccgagcatctgatgcatccacccact
aaggagacttatcggatctggatgcatgaaatgctctacatagaggagtgggcacagatg
gatcatatttctagatacaacattaagacctctctacagctggttaaccggttcctactg
gtccctggggcccttagtggtgccaagtacgcccagggtggggaactgttcgcccggatg
aagctagacgatgaactgtcggaggattcggctgggggccgcctcattctgatgagttcc
aacgtagcgtggctggccccattcaaccctgacgataaaatgaactccaggcagaataaa
aaggtataccaagtgttactggaagacaaaggaaagaatttcatctttctccgactgcca
gagaagtgtgtgtcagagctgaatctaacatgtgaccaagagtttcatgctgagatccag
ttccagctgaaccgagtctccatgtgtgagatgcactcggccattgaccaactgcccacc
ctggaccttgtatttcccccaccccagaggattccctcctcaccctggttccccgaggac
atggattttagcgagacagttaatgaacgactgaatgagaagcaaaaggcagccatccgg
ggcattacggcagcaggagacaagtgcctcccccctctactgctggtgggtccctggggg
acgggcaagacgtacaccctggcacaggcagcaaaacacgcactggaggtagaggagaac
cgcatcctcatctgtacacactccaacagtgctgcagatttatacattaaagattttatt
caccctattgtgaaagagggccacatggaggcggtaccactgcgtatctactaccgccac
cggtgggtgcaaactgtccccgaagtggttctgcaatactgtctcctagaaatgtctgcc
tcccaggggaacttcaggatgccttccagggaggaggtggacaaacatcgcatcatcatc
accacgctcaaaactgcccgatatctgtgtgaccttgaccttcctcaaggatattttagt
catatatttgtggatgaagcagcacaagctttggagagtgagaccctgattcctctatct
ctggctggccggaccaccaaaatcatcctggcaggggaccacatgcagttgaacccagag
gtatactcggactttgccaagcagcagggcttccagaagtctctgttggaccgactgtac
gagctgtaccctgacgactgtccctgtaagatcatgctgtgtgagaactaccgctctcac
gaggccatcatcgacttcacctccgatctcttctacgacagtaaactgattcccagtggg
aaccagccagcacatcctagctattaccctctgacgtttttctcgacgcgaggtgaggac
ttgcaacatgagaacagtacaggattctataatattgctgaggtacatgaagtagtggac
cgagtggatgacctacagaagaactggccgccagaatggggggaggtggagggtaatatt
ggagtcgtggccccttattctgaccaggtgttcaggattcgtggcgagctcaggaaaaga
aaaatgcagtatgtcagtgtagagagagtttttaatgttcaaggtaaacagtttcgtgcc
atcatcctgagcacggtcaggaccagacacacctgtagctccgacgcatcccaggaggat
gtctatgactacggcttcctgtccaacgtcaaactgctaaatacagcgctcaccagagcc
cagtctattgttgttgttgtaggggaccccctgtctctttgtcttgtgggcaaatgcaga
aaagtatgggaatatttcctggaaacatgtaatgagcataaaagtttctttggcctgaag
ttcagtgttctgaaggcccagttaaacagtgctgagctgagaaagacctatgtcctcaat
cccttagcccccgagtttgttcccaaccgcctgtaccatgtgaccagtcaaaccaatgta
ggagctggagcctcaggtggtccaaacgcagccaaccctgggtactttttgggacaaaaa
atgatgtaccctggaggaccatattctcaacagatgtatgttcctctgccctaccaaggc
tactatcccccagttatgtacagaccttatgtgtccccgttcattggtgggggaggagtt
ggaggaagaggaagagtaccagctagagttatctaccccagacaagtgcctgtcaatggc
tcctcaacaaaatcctcatctcctgctaaatcttcgggatctgacactgagagagtagcc
agccctgatataacaagaaacacggagtctccccaaggacaagggtctgtcaagaagggg
cagtcctctaggagcagggcaatggtgtatgtgccaaggataccagctccttatcctgcc
atgtactatccttatcagccttatccaggatattactacctacccgaggacccaaggtta
gcgcagactcatgcaaggtacccttacattgccccagggataccaccccaagtgtatcca
cacccttacccggctggcccatacatcggtactccaatcagaccacctcagggtggttct
cctgagaataccccttcaccgggtgaaagaagtcccaactcccaaaggagccactctctg
tctccaggaccccagagacctccaagatcacagtctcctgctatgtctccaaactctgct
gccgctgttgctgctgctgcagccgctgctgctgctgctggggcaggcccccatttccag
ttgctgcccaacgtgaagcacatccctgcccatctgtataccaaagcaggaagttctgca
ggcaactccaggtctagcactcctctaggtgggagagattcacctgccactgaaagagct
ggggaggaggtgagagccagctttgagcatgattatctgaagtctgttagtccgaaactg
gacttgcaagaaaggagagcatctgcacagagcccattggcaagggttatctcacaaaga
caagggtacatacgagatgagctggaggctatgacattacatggaggtcaaaggactcac
taccagagtattgtcaccacaacaaggagtagcagtggttccatgcagaacgggtcacga
gtgatggagaaaggtaggagcaacaagaaaccgtcaaaattagaactccactcgacgaca
ggattcagccggcagttcagtgaagacatcaccaccccaacggaaatcacaaacttggtg
aagatgattgacgacaatgatgatgtggacatggagaccagacaactgacccaccagtca
tacgccgcacagaaaaacacctctgggcgtctgtacctgaatatcccctctcagcaggaa
ctagccatgggagagtctgcttcttcatccccaccctcagggagtcccccattgggtgac
cagaaaccgacctatgctggtgtactgagaaggagactgccctcagctcagggggacata
gaccccagtttgcttgagcccatgacaccccacactcctcttggattcacgactcctggt
acagaaatcgacacggatccactgggcattcttcgaaatctgaacatcaattcttcggct
gagaatcaaagaacttacaagtatttttcttag
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integrated database retrieval system
