Magallana angulata (Portugese oyster): 128165738
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Entry
128165738 CDS
T09348
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128165738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128165738
03041 Spliceosome [BR:
canu03041
]
128165738
03009 Ribosome biogenesis [BR:
canu03009
]
128165738
03016 Transfer RNA biogenesis [BR:
canu03016
]
128165738
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128165738
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128165738
Spliceosome [BR:
canu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128165738
Complex C
U4/U6.U5 tri-SnRNP related factors
128165738
Ribosome biogenesis [BR:
canu03009
]
Eukaryotic type
Pre-60S particles
Helicases
128165738
Transfer RNA biogenesis [BR:
canu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128165738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
SRP68
nSTAND3
Death_3
Motif
Other DBs
NCBI-GeneID:
128165738
NCBI-ProteinID:
XP_052686521
LinkDB
All DBs
Position
10:complement(306560..321897)
Genome browser
AA seq
1025 aa
AA seq
DB search
MADGFDDDLFNVFDGAETKQQQSTPKGKDVPKSDIARTEELLQSIVSNKRAAEENEEEEE
HQPKKQKAEDTGQTEIMSRIQVHRVETVEACLHEVAIPPEAEFVPLKPMMEKPAKEYPFI
LDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDKQRVIYTSPIKALSNQKY
RELYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRD
KERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHHQPCHVVYTDYRPTPLQHY
IFPAGSNGIYMVVDENGEFREENFSTAMSVLRDAGGAAKGDQRGRRGGFKAAESNCFNIV
KMIMERNFAPVIVFSFSKKDCEAYALQMSKLNFNSEEEKALVDEVFNNAIDNLSDDDKKL
PQVEHVLPLLRKGIGVHHSGLLPLLKETIEILFSEGLIKALFATETFSMGLNMPARTVLF
TAARKFDGKDFRWVTSGEYIQMSGRAGRRGIDDRGIVILMVDEKISPSVGKQIVKGQADP
LNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYASIPELCEKLKDTEEKYNKLTVE
NEDSVASYYKIRQQLDNLGKELLTFIQKPQYILPFLQPGRLVQVKNEKDEFGWGAVINFQ
KKANQSKTPSGAESSYVVEVLLNLSRETSRSKDVNTIKPCPKGEKGEMQVVPVLVHLIQA
ISAVRLYIPSDLRPPDNRQSVLKSIQEVEKRFPDGIPLLDPIEDMGIKEKGLKDIVKKTE
AFEHRMYSHPLHKDSNLENLYTQYQSKAQVGNEIRAIKSELKKKKSLLQMDELKCRKRVL
RRMGYCTASDVIELKGRVACEISSGDELLLTELLFNGVFNDLTHQQCCALVSCFVFQENA
GSETPKLTEELSGPLRIMQDTARRIARVSIEAKLEMNEEDYVSTFKPHMMDVVNAWCNGA
TFSQICKMTNIFEGSIIRCMRRLEETLRQLMQAAKAIGNSELENKFAEGIRSIKRDIVFA
ASLYL
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggcagatggttttgacgacgacttatttaatgtgtttgatggagctgaaaccaaacag
caacagagtacaccaaaagggaaagacgtcccgaaatcggatattgcgaggacagaggaa
ctgctgcagagtattgtaagtaataagcgagcggccgaggaaaatgaagaggaagaagaa
caccaaccaaaaaaacagaaagcggaggacacaggacagacagaaatcatgtccagaatc
caggttcacagagtggagacggtggaggcctgcctacacgaggtggctatccccccagag
gcagaatttgttcccctgaagcctatgatggagaaaccagccaaggagtacccatttatt
ctggatcctttccagaaagaggctctgctgtgtctggagaacaaccagtctgtccttgtg
tcggcccacacatcagccggcaaaacagtggtggctgtgtacgctatagcgatgtctctg
agggacaaacagcgggtcatctacacgtcccccatcaaagcactcagtaaccagaaatac
cgggagctgtacgaagagttccaggatgtaggtctgatgacgggagacgtaacaataaat
cccaccgccagctgtcttgtcatgacaacagagattctgaggagcatgctgtacagggga
tcagagattatgagggaggtgggctgggtcatattcgatgagatccactacatgcgagat
aaagagaggggtgtggtgtgggaggagaccatcattctacttcctgataacgtccattac
gtgttcctgtcggccaccatccctaacgccagacaattcgccgaatggatctgccacctc
caccatcagccctgtcatgtggtatacacagactatcgacccactcctttacaacattac
atcttcccagcagggagtaacgggatttatatggtggttgatgaaaacggagaattccgg
gaagaaaacttcagcactgccatgtctgtgttgagggacgctggtggggctgccaagggg
gatcagaggggccgcagaggggggtttaaagccgctgaatccaactgttttaacattgtg
aagatgataatggagaggaactttgccccggtgattgtgtttagcttcagtaagaaggac
tgtgaagcctatgccttacagatgtctaaactgaactttaactcagaggaagaaaaagct
ctggtggatgaagtgttcaataatgctatagacaacctgtctgacgatgacaaaaaacta
ccacaggtggagcatgttctccccttactgaggaagggcatcggagtccatcactcagga
ctgctgcctctgttaaaggagaccattgaaattctgttctctgagggacttataaaggcc
ctttttgctacagagacgttttctatgggacttaacatgccggcaaggactgttctcttt
acagctgctcgaaagtttgatggcaaagatttcagatgggtgacgtcaggtgaatacata
cagatgagtgggcgagccggtcgccgtggtattgatgatagaggaatcgtcatactgatg
gtggacgaaaagatcagtccgtcagtcgggaaacaaattgtcaagggccaagctgaccct
ttgaactcggcgttccacttgacttacaacatggtgctcaatctattacgagtggaggaa
atcaacccagagtacatgttggaacggtccttttatcagttccagaactacgcctcgata
cctgaactgtgcgagaagctcaaagacacagaagagaagtacaataaactaacagtagaa
aacgaggacagtgtggcctcctattacaaaatcagacaacagctggacaacctgggcaag
gaattgctgaccttcatacagaaaccacagtacatcttgcccttcctacagcctgggcgt
cttgtacaggtgaaaaatgaaaaagatgaatttgggtggggagcagtcattaactttcag
aagaaagcaaatcagagcaaaacaccctcgggggcagaatcctcttatgtggtagaagta
ttgctgaacttgtcgcgggaaacatcccgaagtaaagacgtcaacactataaaaccgtgc
cctaaaggtgaaaagggagagatgcaggttgttccagttcttgtccatttgatccaagcc
atcagtgcagtaaggttatacatccccagtgacctccgacccccagataatcgtcagagt
gtactcaaatcaatacaggaagttgagaaacgttttcctgatggaattcccctactggat
ccaatagaggatatgggaattaaggagaaaggtctcaaggacattgtcaagaaaaccgag
gcatttgaacacagaatgtactcccatcctcttcacaaagacagcaacttggagaatctg
tatacacagtaccagagtaaagcccaggttggaaatgagatcagggcaataaaatcagaa
ctcaagaaaaagaagtcactgctgcaaatggatgagttaaaatgtcgtaagagagtgctg
cgtcggatgggatactgcactgcctcggacgtgatagaacttaagggcagagtggcgtgt
gaaatcagcagtggggatgagctgctattaacggaactgttattcaacggagtgttcaac
gacctgacccaccagcagtgctgcgccctggtgtcgtgtttcgtgttccaggagaatgcg
ggctcagaaacgccgaagctgaccgaggagctctcaggacccctcaggatcatgcaggat
acagctcgccgaatagcacgggtaagtattgaggccaagctagagatgaatgaggaagac
tacgtctccacgtttaaacctcacatgatggacgtcgtcaatgcttggtgtaacggtgcc
accttctcacagatctgcaaaatgaccaacatatttgagggtagcatcatccgctgtatg
aggcgactggaagagactctccgtcagttgatgcaggctgctaaagccattggaaattct
gagcttgaaaacaaatttgctgaaggaatacgaagcatcaagagagacattgtatttgct
gccagtttgtacctgtag
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