Magallana angulata (Portugese oyster): 128167500
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Entry
128167500 CDS
T09348
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128167500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
canu03041
]
128167500
Spliceosome [BR:
canu03041
]
Complex B
Other components
Prp19-related factors
128167500
Complex C
128167500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
Nup35_RRM_2
RRM_YTH1
RRM_occluded
zf-CCCH_2
zf-CCCH
RRM_3
zf-CCCH_4
zf-CCCH_3
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
128167500
NCBI-ProteinID:
XP_052689215
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All DBs
Position
10:19873050..19879210
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AA seq
434 aa
AA seq
DB search
MATSKGANTYNRQNWEDAEFPILCQTCLGDNPYIRMMKEKYGKECKICARPFTVFRWCPG
ARMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPVQVRDAALKVQDNMPKSDVNKEYYTQN
MEREIATNDGTAPGGALGKAMAPSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRFYGSNDPVADKLLQRYTDMPKLTLPEDKTITTLYIGNLG
EKIGEKELRDHFYQFGEIRMINVVAKQQCAFVQFTSRSSAEAAAEKSFNKLIVGGRRLTI
KWGRSQGQQLALKKEGEEDDKDLEPVPGLPGALPAPPEEIANNFFNLSNPPPPMGMPLRP
PPLGMPPRGPPMMPYGMARGPPPPGVRLPPPPPGMMPLRPPPGPPRMTPVTSVAVHYPSQ
DPTRMGAIPSAGNT
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatcgaagggtgcgaatacgtacaatcgacaaaattgggaagatgcggaattt
cccattttgtgtcaaacatgccttggagataatccatacatcagaatgatgaaggaaaaa
tatgggaaagagtgcaagatatgtgcccgcccttttactgtattcagatggtgtcccgga
gcccgtatgagatttaagaaaacagaagtgtgtcagacatgctccaaactgaaaaatgtc
tgtcagacatgcttgctagatctggagtatggcttgcctgtccaggttcgagatgctgct
ctaaaagttcaagacaatatgcccaagtcagatgtgaacaaagaatattatacacagaac
atggagagagagattgcaactaatgatggaacagcacctggtggtgccctagggaaagcg
atggcacccagtgacatgcttcttaaactggccaggactaccccatactacaagaggaat
cgcccacacatttgttcattttgggtcaaaggagaatgcaagcgaggggaggaatgtcca
tacagacatgaaaagccgactgacccagatgatcctctggccgatcaaaacatcaaggac
cgcttttacggcagcaatgacccagtggcagataaattattacagagatacacagacatg
cccaaactcactctgccagaggacaagacaatcaccacactctacatcggaaatctaggg
gagaaaattggggaaaaggaacttagggaccatttctatcagtttggagagatacgcatg
ataaatgtggtggctaagcagcagtgtgcttttgtgcaattcacatcaaggtcctcagcg
gaagctgctgccgagaaatcatttaacaaactaattgttggcgggcgtcgtctcaccatc
aaatggggcaggtcccaggggcaacagctggctctgaagaaggagggggaggaggatgac
aaagatctggagcccgtccctggtctccctggggctttgcctgcaccccctgaagagatt
gccaacaacttctttaatctcagcaacccacccccacccatgggcatgcctctcagaccc
ccacccctcgggatgccacctcgagggcctcccatgatgccctatggaatggccagagga
ccccctcctccaggtgtgcgactgccccctccacccccaggaatgatgcccctgagaccc
cctcctggtcctcccagaatgaccccagtgacctctgtggctgtccactacccctcacaa
gatccgaccaggatgggagccataccatccgctggaaatacttga
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