Magallana angulata (Portugese oyster): 128170548
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Entry
128170548 CDS
T09348
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03015
mRNA surveillance pathway
canu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128170548
09123 Folding, sorting and degradation
03018 RNA degradation
128170548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128170548
03041 Spliceosome [BR:
canu03041
]
128170548
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128170548
mRNA cycle factors
Stress granule specific factors
128170548
Spliceosome [BR:
canu03041
]
Complex C
Other components
Complex C specific factors
128170548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
128170548
NCBI-ProteinID:
XP_052692297
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All DBs
Position
1:complement(19392506..19399086)
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AA seq
646 aa
AA seq
DB search
MSTTTMNPAGPSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYA
YVNFQQPADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL
YDTFSAFGNILSCKIVCDEHGSRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMS
RRERLEVLGDKMRKFNNVYVKNFSEEINDETLREMFEPYGKIISAKVMTDDGSGKGKGFG
FVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGV
NLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMN
GRIVVAKPLYVALAQRKEDRKAHLASQYMQRITSMRMQGQQIGQVSQMFQPGSAGYFVPT
MPQAQRTYFTPNNMPAMRSNPRWQTTVRPTGQPGSGFQTMPGAPQIRQQRPTGQTNVRAG
VSARPITGQSGTPNAQQRMPVNQQVGGRPQGGQPTVPAAANRQQGYKSYGGGQMMKQQPG
QTPGMQQAPPQAVIVQGQDPLTATMLATAPPQEQKQMLGERLFPLISTMFPDLAGKITGM
LLEIDNSELLHMLESQESLEAKVKEAVAVLQAHQAKESATTTKPAE
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaactacgatgaatccagctggtcccagctacccaatggcctccctctatgtt
ggagatctccacccagacgttacagaagctatgttgttcgagaaattctccacagctgga
ccagttctgagtatcagagtgtgcagagacatgatcacgaggcgatctctgggttatgca
tatgtcaactttcaacaacctgcagatgctgagagagctttagataccatgaacttcgat
accatcaaagggcgaccaatcagaataatgtggtcccaacgtgatccatccctcagaaag
tccggagtgggcaatgtttttatcaagaacctggacaagagcattgacaacaaagctctt
tatgacacattttctgcttttggcaatattttgtcttgtaagattgtctgtgatgaacat
ggctcaagaggctacgggtttgtccacttcgagacagaagaagctgcaagaatagccata
gagaaggtcaacggcatgttgctaaatggaaagaaagtgtttgtcgggcgtttcatgagc
aggagggaaagactggaagttcttggtgacaaaatgaggaagttcaacaatgtatatgtg
aaaaacttcagtgaagaaatcaatgatgaaacactgagggagatgtttgaaccctatggc
aaaatcatcagtgccaaggtcatgacagacgatggctcaggaaaaggcaaagggtttggt
tttgtaagctttgaagatccagaggctgctgaaaaggctgtagaggctcttaatggaaat
gacaattctggaaaaatattatatgttggacgtgctcaaaagaagatcgagcgacaggct
gagcttaaggagaagtttgagcggattaggatggagaggatcaacaggtaccagggagtc
aacttgtacgtcaaaaatctggacgataacatcgacgatgagagactcagaaaggagttt
gctcagtttggtaccatcaccagtgccaaggtgatgactgaaggtggcagatccaaggga
tttggattcgtttgctttagctccccagaagaagccaccaaagctgtcaccgaaatgaat
ggaagaattgttgtggctaaacctctgtatgtggctctggctcagaggaaggaggatcgt
aaggctcatcttgcctcacagtacatgcagcgcattacaagcatgcgcatgcagggacaa
caaattggacaggtgagccagatgttccagcctggaagtgctggatactttgtacctacc
atgcctcaagcccagagaacatacttcacccccaacaacatgccagccatgagaagcaat
cctagatggcagacaactgtaagacccactggtcagcctggtagtggattccaaaccatg
cctggagctccgcagataagacagcagaggcctacaggccagaccaacgttcgtgctgga
gtaagtgcccggccaatcactggtcagtcaggaacccccaacgctcagcagcgcatgcct
gtcaaccaacaggtgggtggacgtccacaaggaggtcagcctactgttcctgccgcagcc
aatcgccaacaaggttacaagagttacggaggaggacagatgatgaagcagcaaccaggt
caaacaccaggcatgcagcaggctccaccacaagctgtgattgttcagggacaagaccca
ttgacagctaccatgttggccactgccccaccccaggaacagaagcagatgctgggagag
cgtttgttccctctcatctcaacaatgttcccagacctggcgggcaagatcacaggcatg
ttgctagaaatcgataactctgagctgctgcacatgttggaatcacaagagtctctggag
gctaaggttaaagaagcagttgctgtgttgcaagctcaccaggctaaagaatctgccact
actaccaaacctgctgagtaa
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