Magallana angulata (Portugese oyster): 128170635
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Entry
128170635 CDS
T09348
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03015
mRNA surveillance pathway
canu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128170635
09123 Folding, sorting and degradation
03018 RNA degradation
128170635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128170635
03041 Spliceosome [BR:
canu03041
]
128170635
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128170635
mRNA cycle factors
Stress granule specific factors
128170635
Spliceosome [BR:
canu03041
]
Complex C
Other components
Complex C specific factors
128170635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBD_DEAH11
RRM_10
RRM_Nup35
RRM_MARF1
RRM_3
RRM_occluded
EIF3CL_C
Motif
Other DBs
NCBI-GeneID:
128170635
NCBI-ProteinID:
XP_052692372
LinkDB
All DBs
Position
1:complement(19404848..19413074)
Genome browser
AA seq
412 aa
AA seq
DB search
MYDCIKIDMASCEDPEAAEKIERQAELKEKFERIRMERINRYQGVNLYIKNLSDNIDDER
LRKEFAQFGTITSAKVMATEDGRSKGFGFVCFRSPEEAAKAIVEMNEKIIEARPLYVALA
QRKEDRKAHLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSIDDEKLREEFSQFGTITS
AKVMTKNDKSKGFGFVSFSSPEEASTAISEMHGRIVVDKPLYVALAQRKEDRRAHLALFN
MQNNTSMDKQGEQRELGVNVYVKNLDDNIDDERLREEFAQFGTITSAKVMTEDGMSKKFG
FVCFSSPEEASKAIEKMNGRIVVAKPLYVALAQKKEDREAHLASQYMQRMRKLQGQQIGL
VSQMFQPGSAGYFVPTMPQAQRTYFTPNNMPAMRSNPRWQTTVRPTGQPGSD
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtatgattgcatcaagattgatatggcaagctgtgaagatccagaggctgctgaaaag
atcgagcgacaggctgagcttaaggaaaagttcgagcgcatcaggatggagaggatcaac
aggtaccagggagtcaacttgtacatcaagaatttgtccgataacatagacgatgagcga
ctcagaaaggaatttgctcagtttggtaccatcaccagtgccaaggtgatggccactgaa
gatggaagatccaagggattcggattcgtttgcttccgttccccagaggaagcagctaaa
gcgatcgttgagatgaatgaaaaaattattgaggcaagacctctgtatgtggctctggct
caaaggaaagaggatcgtaaggctcatcttgcatcacagtatatgcaacgcacttcaagc
agggacatgccagaacaccgaataggaccaggagtaaatttgtttatcaagaaccttgac
aagagtatcgatgatgagaaattgcgagaggagttttctcagtttggtaccatcaccagt
gccaaggtgatgactaaaaatgataaatcgaaaggtttcgggtttgtgagctttagttcc
ccagaggaagcttctactgctatcagtgaaatgcatggaagaattgttgttgataaacct
ctgtatgtggctctggctcagaggaaggaggatcgtagggctcatcttgctctcttcaac
atgcagaataatacaagtatggacaagcagggagaacaaagagaactgggagtcaatgtg
tacgtcaagaatctggatgacaacatcgatgatgaacgactcagagaggagtttgctcag
tttggtaccattaccagtgccaaggtgatgactgaagatggtatgtccaagaaatttgga
ttcgtttgcttcagttccccagaggaagccagcaaagcaatcgagaagatgaatggaaga
atcgttgtagctaaacctctatatgtagctctggcacagaaaaaagaggaccgcgaagct
catcttgcctcccagtacatgcagcgcatgcgcaagctgcagggacaacaaataggactg
gtgagccagatgttccagcctggaagtgctggatactttgtacctaccatgcctcaagcc
cagagaacatacttcacccccaacaacatgccagccatgagaagcaaccctagatggcag
acaactgtaagacccactggtcagcctggtagtgattaa
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integrated database retrieval system
