Magallana angulata (Portugese oyster): 128175317
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Entry
128175317 CDS
T09348
Name
(RefSeq) endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
canu
Magallana angulata (Portugese oyster)
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
canu03036
]
128175317
Chromosome and associated proteins [BR:
canu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128175317
microRNA pathway
RISC loading complex
128175317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
dsrm
MpPF1
Motif
Other DBs
NCBI-GeneID:
128175317
NCBI-ProteinID:
XP_052696809
LinkDB
All DBs
Position
3:14020606..14033211
Genome browser
AA seq
1873 aa
AA seq
DB search
MVRTETGPVKRLPRHLRNEDIPSHTFTPRTYQVELLDAALQRNTIVCLGTSGGNTFISVM
LLKEFSTELRKQLQCGGKRSVVCLNSDESIQEISQVIKHHSDLNVMPIYELSEDESKLNS
MLNDHQILVTKPSVFNDILLKKFLLPVQINLVILENCHLILQEEHPYQSIINIIHNSVPR
EAAARILGLTSSFISQKCHDPGELENIIRSLENHLSARAETATLVIAERYGIRPKEYLKF
CDNYEDVTGTLTLLDDVLSSALEFLNECNMEDEEDDDRDPKEIPIFVFSECLNILYILGP
WCASCIANMFINQIEKVDKHETIPVHKKFLKYCLTQLRIVTTLFELNFTPNYDVEELLQY
STPRVYELINHLRKYKPEYDFMIVSSGGDMDGFMGEEDRDSQNGDSDGDESEMSDDSVVM
SDEETSDRAYKGNVLHIAVKREPDNGTLQKTLDPLNSDSEKYLCGIVFVEHRYVALAINK
FLEEVCSWDENLCFVKSQHLTGQGLKDGKSKKGNWKKQEDVLRKFRLQDLNLLVSTTVLE
DGIDVPKCNLIVKFDPPRSYKSYSQSKGRARARDSEYVILVEENKKEMFMQDYNVFKGIE
DVLVDRRNEEEDEEEDNHCEDTSKVLLPYMPSSDNPHICVTVETAIAFVNRYCAKLPSDA
FTHLTPKCTLQEISGEGGTMYRATLNLPINSPYKRSVQGEVMPTKNLAKRAVALKLCQCL
HEAGELDDQLNPVGKEVFTMEEEQEEEDAADGEEGEDYSGEGRPGTTKRKQYYFKRLAAS
LVQSHPSTEECLLYNISLQLSKAISDEQNTRGRKICAPEDTPRGFGVLTSKHIPQVPTFP
VYTRSGEVTASIDVLSSNFSVSSEELRRLRDFHRFTFTNVLRLEKDPMEFCPDESDLGYL
IVPLNKDDDGNVVLDWTFIKEVEDSKSHVRRNIHDSKREQFVFSKEEYEDAVVMPSYRNV
DQPQHFYVAEIRSDLNPSSPFPSPELYKTFSAYYTTKYGLTITNLEQPLLDVDHTSARLN
LLTPRYMNQKGVALPTSSAETKKARRENLQQKQILVPELCEIHVFPASLWRKAVCLPTIL
YRLNYLLVADEIRMRIAEGPGIGLIKLEEGFRFQPLDFGFDLKEEDDDGSNVCNSTVNDE
SVDDKLVNGCDSPSASQNGCDSDNVISEEDECDTKKAESCDTKQNLKAAFQNEKAASDIC
DIQGNVSSNCNHGKNGYLNHDEEWGNTLQDQSNEKTEKCWDKAHPISEKSMNDLTSELNE
MNIHVTNSPLKKTPCDTILSDFPEVGVFKLQDKPSIPIPKAEILKEEVDFPELTISLDQE
VDLSTFVGPSPCTILQALTMSNANDFFSLERLETIGDSFLKYAITVYLYCTYPGIHEGKL
SYLRSKQVSNCNLYRLGKRKGFADCMISTKFEPYENWLPPGYVINDDKRKGPVPKVLLIR
NNLGQLEKVRDGSIIDSFCPENATLNWVPKISELTEDSENENDNRGIPLQNNRKCEELCS
NNENHENFEEELEELETLPERVRQEEKDQVVIPYNLQTLHSIPDKSIADCVESLIGCYLT
SCGKKAALKFMHWLGLKVLPQKKKGMVQDTELLSLQCPDSPLLVHVPDHNSILHRLLEGY
DTLEQRIGYEFRDKSYLLQAFTHASYHYNTVTDCYQRLEFLGDAILDYVITRHLYEDSCK
YSPGVLTDLRSALVNNNIFAALAVKWDFHKYFKAISPPLFGVIEKFVARQKEREDEIDLS
DDEGEGEEEEHVELEVPKALGDIFESLAGAIYLDSKMSLDTVWRVYYRIMKPQIDKYLLS
IPKSPVRELLEMEPETAKFEKPERTLEGKIRVTVNVVTKGVFTGVGRNYRIAKSAAAKKA
LRSIKALQAGGLV
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggttagaacagaaactggacctgttaaaaggttgccaaggcatctgagaaatgaggat
attccttcacacacatttactcccaggacttatcaggtggaacttcttgatgctgctctg
cagaggaacaccatagtctgcctgggaaccagtgggggaaataccttcatttcggtgatg
cttctgaaggagttttccactgagctcagaaaacagctgcaatgtgggggaaagagaagt
gttgtatgcttaaattcagatgaaagcattcaagagatttcccaagtcattaaacatcac
agtgatcttaatgttatgcccatatacgaactatctgaggatgaatcaaaattaaattca
atgctcaatgaccatcaaatactggtgaccaaaccatcagtgttcaatgacatactgctg
aaaaagttcttactcccagtccaaattaatctagtcatcttagaaaactgtcacctgatt
cttcaggaagaacatccttaccaaagcatcataaatatcatccacaacagtgttcctagg
gaagcagctgctaggattctaggcttgacatcctcctttataagtcagaaatgtcatgat
ccaggagaactagaaaacatcattaggtcactggagaatcaccttagtgccagagcagag
acagctacccttgtcattgcagagagatatggaatacgtccaaaggaatatcttaaattt
tgtgataattatgaagatgtaacaggtactctcacactgctggatgatgtattgagcagt
gctctggaatttctgaatgaatgcaacatggaagatgaagaggatgatgaccgagatcca
aaggaaattccaatctttgtcttctccgaatgtcttaatattctgtacattttaggccca
tggtgtgcctcttgtattgcaaacatgttcatcaatcaaatagaaaaagtggataagcat
gaaacaataccagtgcataagaagttcctgaaatattgtttaactcagttacggattgtt
accactctgtttgagctaaactttacacctaattatgatgtagaagaactgctgcagtat
tccacaccaagagtttacgaactgatcaatcatctgcgtaaatacaagccagagtatgat
tttatgattgtgagtagtgggggagacatggacgggtttatgggggaggaggatagagat
agtcagaacggggatagtgatggggacgaatccgaaatgtcggatgactctgtggtcatg
tcagatgaggagacatcagacagagcatacaaaggcaatgttcttcacatagctgtgaaa
agggagccagacaatgggaccctgcaaaagaccttggacccattgaattcagacagtgaa
aaatacctgtgtgggatagtgtttgtggaacatagatatgtagctctagccattaataaa
ttcctcgaagaagtgtgttcatgggatgaaaatctgtgctttgttaagagccagcattta
actggacaaggactgaaggatgggaaatccaagaaagggaattggaagaagcaagaggat
gtgttgaggaaattcagactacaggaccttaacttgttagtctccacaactgtgttggag
gatggtatagatgtccctaaatgtaacctcatagtcaagtttgatcctcccagaagttac
aagtcttacagccaatcaaagggtcgtgctagagccagagactctgagtatgtgattctg
gtagaagaaaacaagaaggagatgttcatgcaggattacaatgtgttcaaaggaatagag
gatgtgttagtagacaggaggaatgaggaggaagatgaggaggaggacaatcattgtgag
gacacatctaaagttctactgccatacatgccaagctcagataatccccatatttgtgtc
accgtggagacagctattgctttcgtcaacaggtactgtgccaagttaccaagtgatgcc
tttactcacctgaccccaaaatgtacgctgcaggagatatctggtgaggggggaactatg
tatagagcaacactgaatctaccgattaactccccttacaaacgctctgtacagggagaa
gtgatgccaacaaagaacctagccaaaagagctgtggctctaaaactctgccaatgtctg
catgaagcaggtgaactggatgatcaactgaatcctgttggaaaggaagtcttcaccatg
gaagaggagcaggaggaggaagacgcagcagatggcgaagagggcgaggattacagtgga
gaagggagaccgggtaccaccaagaggaagcagtactatttcaagaggttggctgcctca
ttggtacaaagtcacccctctacagaggaatgtctgctgtacaatatatctcttcaactg
agcaaagccatatcagatgagcagaacaccagaggtcggaagatctgtgccccggaggac
acaccgagggggttcggagttctcacatccaaacatattcctcaggtaccaacattccca
gtatacacaaggtcaggggaggtaactgcctccattgatgtccttagcagtaatttttcg
gtatcctctgaggagctgaggagactgagagatttccacagatttacatttactaatgtc
ctacgtttagaaaaggaccccatggagttttgtccagatgaaagtgatctggggtatctt
atagttccacttaataaagatgatgatggcaatgtagtccttgattggaccttcatcaaa
gaagttgaagattccaaatcacatgtccgaagaaacattcatgactctaaaagagaacag
tttgtgttttccaaggaagagtatgaagatgcggttgtgatgccatcctatcgaaatgta
gaccaaccacagcatttctatgtggcagaaatccgatccgacctgaatccatcctcacct
ttcccatcgccagagttgtacaagaccttcagtgcctattacacaaccaaatacggtttg
accatcaccaatttggagcagccattattagacgtagaccacacgtctgctaggttaaat
ctgctcactcctcgttacatgaaccaaaagggggtggcattgcccacaagcagtgcagaa
actaagaaagccaggagggaaaatctccagcagaaacaaattcttgtcccagaactgtgt
gaaatccatgtctttcctgcttcgctatggcgtaaagccgtctgcttgcccacaatattg
tacagattgaattacttgcttgtagctgacgaaattcgcatgagaattgctgagggccct
ggaataggtttgataaaattggaagaaggttttcgttttcagccattggatttcggattt
gatctgaaagaggaagatgatgatggcagcaatgtgtgcaatagtacagtaaatgatgaa
agtgtggacgataaacttgtgaatggttgtgattcaccaagtgctagtcaaaacggttgt
gatagtgacaatgtcatctctgaagaagatgaatgtgatacaaagaaagcagaaagctgt
gatacaaagcaaaatctcaaagcagcattccaaaatgaaaaggcagctagtgacatctgt
gatattcagggcaatgtgtccagtaactgtaaccatggcaaaaatggatatctgaatcat
gatgaagaatgggggaatactttgcaggatcaaagtaatgaaaaaactgagaagtgttgg
gacaaagctcatcccatttcagaaaagtctatgaatgatttaacatcagaactgaatgag
atgaatattcatgtcaccaattctccattgaagaagactccatgtgatacaatcttgtct
gatttccctgaagtgggtgtcttcaaacttcaggataaaccaagcataccaattccaaag
gctgagatcctcaaagaggaggtggattttccagagctcaccatatcattagaccaagaa
gtggacttgagtacttttgtaggcccaagtccatgtaccatattgcaagctttaaccatg
tccaatgccaatgatttcttcagtttagagaggttggaaacaataggtgattccttcttg
aaatatgccattactgtatacttatactgtacatatccaggtattcacgaggggaagctt
agttacttgagaagtaaacaagttagcaattgtaacctttaccggttagggaaaagaaaa
ggatttgcagattgcatgatttccaccaaatttgaaccatatgaaaactggttgcctcca
gggtatgttatcaatgatgacaaaagaaaagggccagtaccaaaagtcctacttataagg
aacaatttaggccagcttgaaaaagtaagggatggcagcattattgattccttctgtcct
gaaaatgccaccttaaattgggtgccaaaaatttcggaattgacagaggattctgaaaat
gaaaatgacaaccgaggaattcctcttcaaaataatagaaaatgtgaagagttgtgctca
aacaatgaaaaccatgagaacttcgaggaagaattagaggagttagagactcttcctgag
agggtgagacaagaggaaaaggaccaggtggtgatcccgtacaacctacagaccctccat
agcatccccgacaagagcatcgcggactgtgtggagtctctgattggctgctatctgact
tcctgtgggaagaaggctgctctgaaattcatgcattggttggggctgaaggttctgcct
cagaagaaaaaaggaatggtgcaagatactgagctgctgagcttgcagtgccctgactct
ccattattggtccatgttcccgaccacaactccattctccatcgtctcctggagggatac
gataccttggagcagaggatagggtatgaattcagagacaaatcttatctccttcaagcc
ttcacacacgcctcataccactacaacactgtcacagactgttaccaaaggctggagttt
ctgggagatgccatcttggattatgtcatcacccgccacctgtatgaagactcatgtaag
tactcaccgggcgtgctcaccgaccttaggtcagcactggtcaacaacaacatttttgcc
gccctggctgttaagtgggacttccacaagtacttcaaggctatctccccaccgttgttt
ggagttatagagaagtttgtagccagacagaaagaacgggaggatgaaattgacctgagt
gatgatgagggagagggggaggaagaagaacatgttgagctggaggtacccaaagctctg
ggagatatatttgagtcattagcaggagccatttacctggatagtaaaatgtccctggat
actgtgtggagagtgtactatcgtattatgaagccgcaaatagacaaatacctgctgagc
attccaaagtctccagtacgtgaacttttagaaatggaaccagaaacagccaagtttgaa
aaaccagagagaaccctggaaggcaagatcagggtgactgtaaatgtggtgaccaaaggc
gtgttcaccggggtcggaaggaactataggatcgccaaaagtgccgctgccaaaaaagct
ctccgctccatcaaagccttgcaagctggcggacttgtataa
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