Magallana angulata (Portugese oyster): 128176162
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Entry
128176162 CDS
T09348
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128176162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
canu03021
]
128176162
03019 Messenger RNA biogenesis [BR:
canu03019
]
128176162
Transcription machinery [BR:
canu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128176162
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
128176162
U7-dependent histone pre-mRNA processing factors
128176162
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
Adaptin_N
INTS1_R4
SPG48
ERICH1_C
Motif
Other DBs
NCBI-GeneID:
128176162
NCBI-ProteinID:
XP_052698231
LinkDB
All DBs
Position
3:complement(51530506..51558379)
Genome browser
AA seq
1285 aa
AA seq
DB search
MADESRRSTAAQFFMDEEDKHNESISTYDKVVELINQASLMSKEAQKINILRQVQELIIH
KDPTLLDNFLDEMLAFQSDRSVDVKKYVITFMEEACKKDPELLNKILPCLQILLQDDNVN
VQKKVILSLPQVYKVIVKWLAKAKNVTEEKSFVWETMKSLKNRMFELIDSENDGIRTHVV
KFMEGVILTLSRKTPDSEIPKSSKPDAEVTLDLVPEDNKYLKVKRLEEQGKQMFETLLQF
QASPHISSINLMTVMGSLTTIARQRPYFFGKVVQSFETLQVNLPPTLAKSQVSSVRKNMK
MHMLSLLKHKASVDYITQITTLLTDLGATNSEVMKNMPKIDESRKRKLEDSGGTTKKAKI
ESEIELDDDDAGMTPFVDRSKVKAPATLKQRQTAVDITAEDIIPRLTPQNVADLVLISMV
MLPDQLPPHFQATYTPIAAAGTEGQIKHMGRLLANQLTAAGMGKGIAEVQLEEVSEEDGG
ASPEYQPTSPKQVIQTVVGGLTEALGPSSSKAANLPAAPQIRSVRPGIKQFKLSTVTSDL
DRDRLDEMTIASVKRILQAEKSASLGNALSARTKLLTSLVSQFGGELKNLLQEYIFEDLR
NRSDLAFAWLYQEYANCQGFCASNLRNERTSLASYDECLTRLLSGLLERTEQTTKEGLFH
RLILEAPAITDNAIQILKKYCMDQDRVVSGINTLRQLILTRPAHRLRFLEVLLMSCHHDM
PEVRATAIHCSKQLYEKGHIRPYIEQYAIKMLKNLLLTKPPTEMLGKSKNDPALQSWTED
TIKMCLYLYLGLLPNNHKLIHQLAMVYTSAGADIKRIILRALENPVKGMGMKSPELLTLV
ESCPKGAETLVTRVIHILTDKASPSPELVERVRDLYHKRVPDVRFLIPVLTGLSKDEVIQ
ALPKLIKLNPIVVKEVFNRLLGGHSDANYTSPLTPVDLLIALHNIDPTKCDMKTIIKATN
LCFSEKNIYTQEVLAVVMKTLMEQDPLPTLFMRTVLQSLSMYPRLMGFILNILQRLISKE
VWKNKKVWEGFIRCCQKMKPQSFTVLLQLRAPQLKSVFESCPDLREPLLTHVNSFAPNQK
AHLPKTVLAVLENPPEVAPAPAQPTEGTPSTPTILPATPTVLTPPPTQVTVVKVEESAPA
PMETQTIQTVQSIQTIGSNLVQIKQEPRDVDETAAQVSENRDKQAKSSSDRKETPSRRGS
KRSTEDKPDTEMEEVDSPENALAIAEEAMDTSVNIDSQGDQSQDSTGDSTSKKSRSRSKS
SESRSSETKSTEGEVRPRRSTRSRK
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaaagcagacgatcgactgcagcacagttcttcatggacgaggaagacaaa
cacaatgagtcgatatcgacttatgataaggttgttgaactcattaatcaggcttctttg
atgtcaaaggaagcccaaaagataaacattctcagacaggttcaagaattaatcattcac
aaggatccgactttgcttgataatttcttagatgaaatgcttgcttttcaaagtgaccgg
tcagttgatgtgaagaaatatgtgataaccttcatggaagaggcttgtaagaaagatcct
gagctgttaaacaagatactgccctgtctgcaaattcttctgcaagatgataatgtcaat
gtccaaaagaaagtcatattgtctttacctcaagtttataaagtcatagtaaaatggcta
gctaaggccaaaaatgtaacagaagaaaaatcttttgtgtgggagactatgaaatccctg
aaaaacagaatgtttgagcttattgactcagagaatgatggaataagaactcatgtcgtg
aagtttatggaaggggttattttgactctgtctcgtaaaactccggattcagagatacca
aaatcttccaagcctgatgctgaggtcactttggatcttgttccagaggacaacaagtat
ctaaaagtcaaacgtttggaggagcaaggcaaacagatgtttgaaacacttctgcaattc
caagcctcacctcacatttccagtataaacctgatgacagtcatgggaagtctgaccacc
atagccagacagaggccgtacttcttcgggaaggtggtgcagtcttttgagactttgcag
gtaaatcttccgcccacactggcgaagtctcaggtgagcagtgtgcgtaagaacatgaag
atgcacatgttgtccctgctgaaacacaaggcctcagtggactacatcacacagataacc
acactcctgacagacctgggggccaccaactcggaggtgatgaagaatatgccaaagatt
gacgagagcaggaagaggaagctggaggactcgggcggtacaacaaagaaagccaaaata
gagagtgagattgaattggatgatgacgatgctggcatgactccttttgtggatcgctct
aaagtaaaagcacctgcaaccctcaaacagcgacagactgcggtagacatcaccgctgag
gacatcatcccccgcctgactccacagaatgtggcagatcttgtcctgattagcatggtg
atgttgccagaccagcttcctccccatttccaggcaacctacacccccatcgctgctgcc
gggacagagggacagataaaacacatggggcgcctactggccaatcagctcactgctgct
ggaatgggcaagggcatcgctgaagtccagcttgaggaggtgtctgaggaggatggaggg
gcgtcccctgagtaccagcccacctctcctaaacaggttatacagacagttgtaggtggc
cttacagaagcacttgggccgtcatcttcaaaggcagctaatctaccagcagctccacaa
atacgatctgtgagacctggaatcaaacaattcaagctgtccacagtgacctctgacctg
gacagagacaggttggatgaaatgaccatcgcctcagtcaaacgaatcctacaggcagag
aaaagtgcatcattagggaatgctttgtcagcccgaaccaaactcctgactagccttgtg
tcgcagtttggtggagaattaaaaaacttgctacaagaatatatatttgaggacctgcgt
aatcgttctgaccttgcctttgcctggctgtaccaggagtatgccaactgtcagggattc
tgcgcgtctaatcttcgcaatgagcggacctcactggccagctatgatgaatgcctgaca
aggctgttatcaggcctccttgagcgaactgaacagaccacgaaggagggattgttccat
cgtcttattttggaagctcctgccatcactgataatgccattcaaattctcaagaaatat
tgcatggaccaggatcgggtggtgagtgggatcaacacgctgcgtcagctgatcctgaca
cgccccgcccacagactgaggttcctagaggtcctccttatgtcatgtcaccatgacatg
cctgaggtcagggccactgccatccactgcagtaaacagctgtatgagaaggggcatatc
aggccctacatagagcaatatgccataaaaatgttgaagaatctcttgctaacaaaacca
cccacagaaatgcttgggaaaagtaaaaatgaccctgccttgcagtcctggactgaggac
actatcaagatgtgtctgtacctgtatctcggcctcctgcccaacaatcacaagctgatt
caccaattggcaatggtgtacacctcagctggagctgacatcaaaagaatcattcttcga
gctctagagaacccagttaaaggaatgggaatgaaatcacccgagctgttgactcttgtg
gagagttgtcccaagggagcagagaccctcgtgaccagggtcattcatatcctgactgat
aaagcctctccatcgcctgagttggtggaacgagtccgagacctttatcacaagcgagta
cccgatgtccgattcctgatacctgtacttacagggctatcaaaggatgaagtaatacaa
gctctacctaaactcatcaagctgaaccccattgttgtaaaagaggtgtttaaccgtctg
ctaggtggccatagtgacgccaactacacatctcctctcactccggtcgatctgttgata
gcactgcacaacattgacccaaccaagtgtgacatgaagaccattatcaaagccaccaac
ctgtgcttcagtgagaagaatatttacacccaggaggtgttggctgtggtgatgaagact
ctgatggagcaggaccccctacccacactgttcatgaggaccgtcctacagtccctgtca
atgtatcccaggctgatgggcttcatcctcaacatcctacagagactcatatctaaagag
gtttggaagaacaagaaggtatgggagggatttatccgctgttgtcagaagatgaagcct
cagtccttcactgttctactacagctcagggctccccagctcaagagtgtatttgagagt
tgtcctgacctcagggagccccttctgacacatgtcaactcttttgctcctaaccagaaa
gcccacctaccaaagacagtgttagctgtactggagaatccccccgaggtagcccctgct
ccagcccagccgactgagggaactccctcaacccccaccattctccctgctacacccaca
gtccttacacccccaccaacacaggtgaccgtggtgaaggtcgaggaatcagcccctgca
ccaatggagactcagaccatacaaacggtccagtctatacagacaataggctcaaacttg
gttcagataaagcaagagccgcgtgatgttgatgagacagcagcacaggtatcagaaaac
agagacaaacaggccaagtcatccagcgacagaaaagagaccccctccagaagaggctca
aagaggtcaacagaggataaacctgacactgaaatggaggaggtggactccccagagaat
gccctggccattgctgaggaggccatggatacatctgttaacattgactcccagggagat
cagtctcaagattccacaggagatagtacttcaaaaaaatcaaggagccggtcaaaatca
tcagaatctaggtcatcagaaactaaatcaactgaaggagaggtcaggccgagaagaagc
acaagatcacggaaataa
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integrated database retrieval system
