Magallana angulata (Portugese oyster): 128178906
Help
Entry
128178906 CDS
T09348
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
canu
Magallana angulata (Portugese oyster)
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
canu03021
]
128178906
03036 Chromosome and associated proteins [BR:
canu03036
]
128178906
Transcription machinery [BR:
canu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128178906
Chromosome and associated proteins [BR:
canu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
128178906
SLIK complex
128178906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
DEAD
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
128178906
NCBI-ProteinID:
XP_052702281
LinkDB
All DBs
Position
3:53673139..53693336
Genome browser
AA seq
1821 aa
AA seq
DB search
MSKPSIEDPADFDSPLFGPLSNDKSPKAGSSNKENKDSIKKEIENNASGSGSDSGNSSSG
SSSDESDSESGSRSGSNSETSSSESDDSESNERSERKTASHLDDDSQDTQSTNLSSKRGR
PRKSSINDIKQILREMSDDPDLLGLRRSGRAKKEPVRYNALGDSDTDDKPRRKGGRKGSD
DWNASDSGSGESSDDYKPSSRALSRPGGRRNLRAAPPRRGRQATSNLSDSDESNSEEDTR
SSNRIYSNKKIRRDYTTRRKGTKSKVSYKEDSDDQTDSDDIIEVTQDQMEAEEEDDNKEI
IEKVLDDRIGRVTATGSKTTIYNVQDNGDPNDGVNPATEETEKQFLIKWKNWAHIHNTWE
SYKTLKEQKVHGLKKLDNYIKKQDEIREWKDQATPEDIDYFECQQEMVQELYQQHMHVER
IIAHSNQKMANENNGYPDYLCKWEGLPYSECTWEEGELVSRKFQVLVDEYNVRNKSQRTP
TPAKYCKALRYRPKFAPLKNQPSFLGGENNQLVLRDYQLDGVNWLMHTWSKENSVILADE
MGLGKTIQTIGFLSILYNTFQVYGPNVLVVPLSTIAAWQREFKLWAPEMNVVIYLGDISS
RNKIREHEWCHSGNKRLKFNVLVTTYEILLKDKSFLGSVNWATLIVDEAHRLKNDDSLLY
KTLFEFNSNHRLLITGTPLQNSLKELWALLHFIMPDKFYKWADFEEKHSSAQKTGFVNLH
KELESFLLRRVKKDVEKSLPAKTEQILRVEMSSIQKQYYRWILTKNYKALSKGLKGNVSS
FVNIIMELKKCCNHSQLIRPPEEEFSDRLASLVKGSGKLILLDKLLLRLKESGHRVLIFS
QMVRMLDILAEYLQMRHFQYQRLDGSVRGDLRRQAMDHFNAEGSEDFCFLLSTRAGGLGV
NLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVSVYRLVTKNSVEEDIVERAKRKMV
LDHLVIQRMDTTGRTVLNRGIPSSNSTPFNKDELTSILKFGAEELFKENDEDEDEPQVDI
DEILKRAETREVEENNTGVGDELLSQFKVVSFDNMEDEEIEQTPGTRTEEEDKSWDSIIP
EADRRKIEEEEEQKRLLELNLPPRSRKSLQQPQVGDDSDDNSRRKGKRNVDDEDSEEDDD
DDEDDDDQPRKRGRPKMSKTSVRGFNDSEIRRFIKSFKKFGRPMTRLDAIACDAELQEKS
ESDLQRLAEILIRNCEQAIEEAKNKTEQDNNEGGKKGNRGPSCKISSVSVNAQAIVKAGQ
ELEPLAAAIPADADERKRYQLPFKAKAVHWDCIWDVEEDSNLLKGIYEYGLGSWEAIKMD
PSLQLHDKILPDGIDLKPQGKHLATRADYLLKVLKKNSSQENGGDTVSTGLGKPRKKRKG
KPKTTAEIIEKDFSDSEEDSRANFNNNSAREETSRDSFFDQHKKKKKTLKPDKIPEEEDT
LTRDSVDIKKKKKKAAKKSKQNDAMHFTAGAVPVPVALESEFTGELPAEVFSKCKEMMRP
VKRALKRLDNPDEGMSDKEQLVHTRQCLLKIGDRINECMGHYNDPEVIKQWRSFLWIFVS
KFTEFDAKKLHKLYKHAYRRREEEQEHEGGNNKPQSSEKHGNHVEKHGEGKKHKRPPESG
DGGEKAAKKVQLEHRPKDHKSSASVSNGPRHSASTNSLTHKHSVLDSSHDSNSNDRWTHA
SPLARAEDQPRTRYENSSSAYGRSQHYPERNYHGNDPRFGDSHHRFNNDRREYSSSHAYH
RDRGDHSSSSYHSHHDHHGNYRSDHRGDRRPDYGQYGHRDYGSNRPDSSSYQSHTDRKRK
GDPITDRRSQKDPRLHEDTSR
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagccttctattgaagatcctgctgactttgacagtcccctctttggaccattg
agtaatgacaaaagtccaaaagcaggttcctctaacaaagagaataaagattccataaaa
aaggagatagagaacaatgccagtgggtctgggtcggactctggaaactcaagtagtggt
tcaagctcagatgagagcgactcagaatctgggtcaaggtcgggttctaactcggaaact
tcatcatcagaatcggatgattcggagtccaatgagaggagtgagaggaagacggcttcc
cacttagacgatgactcccaggatactcagagtaccaatctgtcctcaaagagaggccgg
ccacgcaaatctagtatcaatgacatcaaacagattttgcgggaaatgtcagatgatcct
gaccttttgggacttagacgatcaggaagggcgaaaaaagaacctgttagatataatgct
ttgggtgacagtgacacagatgataagccaagaagaaaaggaggaagaaagggttcagat
gactggaatgcttctgatagtggcagtggtgagagtagtgacgattacaaaccttcctca
agggccttgtccaggccgggaggtagaagaaacttgcgggccgcaccaccgaggcgaggc
agacaggccaccagtaatctgagcgattcagatgagtccaacagtgaggaggatactcgc
agttctaacaggatttactccaacaaaaaaatcagacgtgactataccacaagaaggaaa
ggaactaagagtaaagtcagttacaaggaagactcggacgaccagacggactcggatgat
attattgaggtcacacaggatcagatggaggccgaggaggaggacgataataaggagatc
atagagaaggtgctggacgaccggatcggacgtgtcacagcaacaggaagcaaaacgacc
atatataatgtacaagacaatggagaccctaacgatggagtgaacccagccaccgaggag
acggagaagcagttcctgatcaagtggaagaactgggcacacatccacaacacctgggag
tcatataaaacactgaaggaacagaaagtccacggtctgaagaagctggacaactacatc
aaaaagcaggacgagatcagagagtggaaagatcaagcaacgcctgaagatattgattat
tttgaatgtcagcaggaaatggtacaggagttgtaccagcaacatatgcatgtggaaaga
attattgctcactcaaaccaaaaaatggccaatgagaacaatggttacccagattacctt
tgtaagtgggaaggtcttccatactcggaatgtacatgggaggaaggcgagcttgtgtca
cggaaatttcaagtgttagtggatgagtacaatgtacgaaacaagtcgcagaggaccccc
actccagccaaatattgcaaagcccttcgataccgtccaaagttcgcaccattgaaaaat
cagccttcattcctgggtggagaaaataatcagcttgtgttgagggattatcagttagat
ggtgttaattggctcatgcatacatggtctaaagaaaacagtgtgatattagcagatgaa
atgggccttgggaagaccattcaaaccataggatttttatcaattttatacaatacattc
caagtgtatggacctaatgtgttagttgtacctctctccaccattgctgcttggcagaga
gaatttaaactctgggctccagaaatgaatgttgtgatatacttaggggatataagtagt
cgaaataagatacgggaacatgaatggtgccacagtggaaacaagaggttaaagttcaat
gtgttggttacaacctatgaaatcctcctgaaagacaagtctttcctgggcagtgtgaac
tgggccaccctgattgtggacgaggcccatcggctgaagaacgacgattctctcctctac
aagactctttttgaatttaattccaaccatagacttctgattacgggtacccctctacag
aactccctcaaagaactgtgggctcttctccacttcatcatgccagacaagttttacaag
tgggctgattttgaggagaaacattcatctgctcagaagacagggtttgttaatttgcac
aaagagctggaatccttcctgttacgtcgtgtaaagaaagatgtggagaaatctctacca
gccaagacggagcaaattctacgagtagagatgtcgtctatacaaaaacagtattacagg
tggatattaacaaagaactataaagcattaagtaaaggactgaagggtaatgtgtccagt
tttgtgaacataataatggaactgaagaagtgttgtaaccattctcagctgatcaggccc
ccagaggaagagttctctgacagacttgcttctctggtcaaaggaagtggcaaattaatt
ttgctggataaactattattaaggctcaaggaatctggtcaccgtgtcctgattttctcc
cagatggttagaatgctggacatcctggcagaatatctacaaatgaggcattttcaatac
caaagattagacgggtcggtgaggggagacctccggaggcaggccatggaccacttcaat
gccgagggatcagaggacttctgtttccttttgtcaactcgggctgggggtctcggggtt
aacttagccactgccgacacagtcattatttttgacagtgactggaatcctcaaaatgac
ctgcaggctcaggctcgagctcacagaatagggcagaaaaatcaggtgagtgtgtacaga
ctggtcaccaagaacagcgtggaggaggacatagtggagagagccaaaaggaaaatggtg
ctggatcatctggtcatccagagaatggacaccacaggccggaccgtgctcaaccggggc
attccttccagtaattctaccccattcaacaaagatgaattgacttccattcttaaattt
ggtgctgaagaattatttaaagaaaatgatgaagatgaggatgaaccacaggtggatata
gatgaaattctaaagcgagctgaaaccagagaagtggaggaaaataatacaggtgtaggg
gacgagctgctgtctcagtttaaagtggtcagctttgacaacatggaggatgaggaaata
gaacaaacaccagggacgaggaccgaggaggaagacaagtcctgggattccatcatccct
gaagcagatagacgaaaaatagaggaagaggaggaacagaaacgcttgttagaacttaac
ctccctccacgatccaggaaatcactgcaacagcctcaggttggtgatgactcagatgac
aatagcaggagaaaaggtaaaaggaatgtggatgatgaagacagcgaagaagacgatgat
gatgatgaagatgatgatgaccagccaaggaaacgtggtagaccaaaaatgtccaagaca
tcagttcggggcttcaatgactctgaaatccgacgctttatcaaaagctttaaaaaattt
ggaagaccaatgacaaggttggatgcaatcgcctgtgatgctgagcttcaagagaaatca
gagagtgatctccagaggctggcagaaatactgatcagaaactgtgaacaagccatagag
gaggccaagaacaagacagagcaggacaataatgaaggaggtaagaaaggtaacaggggt
ccctcttgcaagatttccagtgtctctgtcaacgcccaggcaattgtgaaggcggggcag
gagctagagcccttggcagcagctatccctgctgatgctgatgagaggaagagataccag
ctaccattcaaagccaaggctgtacactgggactgcatctgggatgtagaggaggactcc
aaccttctgaagggcatctatgagtatggactgggtagctgggaggccattaaaatggac
cccagccttcagcttcatgataagattctgcctgatggaattgatctgaaaccacaagga
aaacacttggctacacgagctgattatctcctgaaggtgctaaagaagaactcaagtcag
gagaatggaggggacacggtgtccacaggattgggcaagcctaggaagaagaggaagggt
aaacccaagacgacggccgagataatagagaaggacttcagtgattccgaggaagattcc
cgtgctaattttaacaataatagtgctagagaagagaccagtcgtgatagcttttttgat
caacataagaaaaagaaaaagactttaaagccggacaagattccagaggaggaagataca
cttacaagggattctgtggatataaaaaagaaaaagaaaaaggcagccaaaaagtccaag
cagaatgatgcaatgcatttcactgctggagcggtacctgttccggtagctctggaatcc
gagttcaccggggagctaccagccgaagttttttcaaagtgcaaggagatgatgcggcca
gtaaaaagagcactaaaacgcttggacaaccccgatgagggaatgtcagacaaagagcag
ctggtacacactcgtcagtgtcttctgaagatcggggaccggatcaatgagtgtatgggt
cactacaacgaccctgaggtcatcaagcagtggcgcagttttctgtggatttttgtgtcc
aagttcaccgagtttgatgctaagaagctccacaagttgtataagcatgcctacaggagg
agagaggaggagcaggaacacgagggtggtaacaacaaaccacagtcatcggaaaaacat
gggaaccatgtggaaaagcatggggagggtaagaaacacaaacggcccccagagtccggg
gatggaggcgagaaagcggccaagaaagtccagcttgagcaccggcccaaggatcacaaa
agttctgcctctgtaagtaacggtccccgtcatagtgccagcaccaacagcttaactcac
aaacacagtgtccttgattctagtcacgactccaactctaacgataggtggactcatgct
agtcccttagcacgggccgaagatcaacctagaactaggtatgagaacagttccagtgcg
tatgggcgttcgcagcattatccagagaggaattaccatggcaatgaccccaggtttggg
gactcacaccataggttcaacaatgatcggcgagagtattcttccagtcatgcatatcat
cgcgatcgaggtgatcattcatcatcaagttaccattctcatcacgatcaccacggtaac
taccgatcagatcaccgtggtgaccggcgtcctgactatggacagtacggtcaccgcgac
tatggcagcaaccgtcccgatagtagtagttaccagtctcatacagacaggaagcgtaaa
ggggacccaatcacagaccggagatctcagaaagaccctcgactccatgaggacaccagc
cggtag
DBGET
integrated database retrieval system
