Magallana angulata (Portugese oyster): 128179430
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Entry
128179430 CDS
T09348
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu04382
Cornified envelope formation
canu04512
ECM-receptor interaction
canu04518
Integrin signaling
canu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128179430
04518 Integrin signaling
128179430
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128179430
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128179430
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
canu04147
]
128179430
00536 Glycosaminoglycan binding proteins [BR:
canu00536
]
128179430
Exosome [BR:
canu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128179430
Glycosaminoglycan binding proteins [BR:
canu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128179430
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128179430
NCBI-ProteinID:
XP_052702799
LinkDB
All DBs
Position
4:28832832..28868264
Genome browser
AA seq
1801 aa
AA seq
DB search
MPSERKGDCSCAPCAEKQDVKNRSAFKTYRNHKAMKSWLLLCVVSVFISSSVQVHAQDLK
ECGANCQTNNGCKCVGEKGSRGVPGALGPPGPQGLRGYPGMEGLPGQKGQKGESGPLGPL
GPKGDRGKMGMPGFPGINGIPGIPGPPGPRGPAGMDGCNGTQGEPGIPGFNGQPGAIGPP
GLPGTKGEKGEPSVGVAIKGQKGEPGIEGFQGLQGPPGRDGPSGLPGLTGPEGPRGYDGL
IGMKGEAGNPGLGKNGQKGDQGEPGSPGPPGPPCDSTKEELQQGNLTQTGPKGNKGERGY
SGRDGLPGSEGQKGEQGFPGMKGPPGMDGEKGVPGIAGPRGKQGLPGLPGLPGLKGDRGM
DGLPGLNGIQGEKGNPGVPGVKGEKGYQGPPGPSGGEGGDGPEGPKGERGPSGERGYPGL
DGLMGLPGSPGRPGPQGGPGTQGLPGPEGPPGPKGNKGDKGNSGLPGIDGLSGQPGLPGE
KGNPGPKGNAGVSIPGVKGANGLPGRDGLPGRKGETGFRGLPGIPGNSTMGRPGLPGPKG
SKGNSGFPGVSGREGLPGLPGAKGDRGGSCRDCLPGLKGEKGTSGQPGTPGIPGEIGRTG
AKGEPGLRGDDGIPGFSGQRGEPGLPGVPGRDGFKGDKGEPYKLESESFKDMCRKGEPGL
PGPPGEQGLNGLPGPQGPRGIDGSPGLPGQKGDRGVDGRDGIPGNPGLPGLIGPKGNPGI
GLPGIPGERGIPGDNGLPGLNGMKGDKGIPGETINVNVDLLKGTKGEPGFPGNPGIPGRD
GLPGLKGDRGEPGLPGVNGLPGMKGERGFDGIPGEAGPRGLPGPRGDRGSDGPSGSPGFD
GRPGEPGPQGLPGVKGDSGQPGRDGRSSIGEKGDSGLPGRPGLQGQPGLPGQDGVPGQDG
LPGMKGDTGPSGLSGLPGSPGLKGEPGVEGPEGTRGAPGEDGRPGLPGVVGAKGTPGLPG
ADGLSGIPGERGESGFPGQPGAPGLDGPQGPPGLPGERGRDGSPGPKGEPGFVGIPGEPG
RDGNDGLPGLQGMKGERGFPGIPGEQGRSGEPGQKGDTGPSGLPGLQGVPGNDGLPGVKG
ESGRPGSPGSSGLPGQDGLPGLPGMKGDQGPAGVGIPGESGIPGERGRDGAPGLPGMKGE
PGQQGLPGFPGMKGERGFPGPAGQNGIPGNDGLPGMKGNPGLNGVPGRAGLKGEPGLNGI
PGREGPKGEAGLPGVPGERGPEGLKGEPGLNGLPGSPGVAGLPGMKGDRGRDGVNGLPGP
KGDSGLPGRDGIKGERGSPGFPGPEGREGLPGMKGERGPEGPFGVKGEPGRSIQGIKGEP
GIPGEQGRDGFPGMKGNAGLPGQPGLPGMKGDQGLGYPGPQGPKGDSGFNGIPGEQGLTG
VPGEPGQPGFPGLKGDSGDRGVPGLPGLQGMPGPEGPQGEPGVPGSPGLPGLKGDAGLPG
RDGFEGIKGERGPSGLPGVRGLKGDRGFPGEKGSIGPQASTKGMRIKGEKGETGDRGRAG
FPGLPGSKGDAGFPGPKGFPGIPGERGVQGFPGMKGESGFPGQPGIPGEDGFPGAQGATG
DPGFPGPPGRTPPSGFLVVRHSQTESEPECPDSTSRLWTGYSLLYIEGNERSHHQDLGWA
GSCMQRFSTMPFLFCNSNNVCNYASRNDKSYWLSTNEPMPMMPVRDPELRRFISRCVVCD
APANVIAVHSQEMSIPECPIGWKGLWIGYSFAMHTGAGPSGGGQSLSSPGSCLEDFRATP
FIECNGSGGTCHFYANKYSFWLTTIDQSQNQFATPVQETLKAGNQRTRVSRCQVCMKTTR
P
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagaacgcaagggggattgcagttgtgcgccgtgcgccgagaaacaagacgtg
aaaaaccgtagtgctttcaaaacttacagaaatcacaaagccatgaagtcatggctctta
ctctgtgtagttagcgtatttatatcaagctcagttcaagttcatgcccaagacttaaaa
gaatgtggagccaactgccagacaaataatggatgtaaatgtgtgggtgaaaaggggtct
aggggtgttcccggagcactgggacccccaggacctcagggtctcaggggttaccccggc
atggaaggacttcccggacaaaaaggtcagaaaggtgaatcaggcccattaggacctctt
ggaccaaagggagacagaggaaaaatgggaatgcctgggtttcctggtatcaatggaatt
ccgggtatccctggaccccctggacctagaggacctgctggtatggatggatgcaatgga
acacagggagaacccggtattcctgggtttaacggtcagcctggtgcaataggacctccc
ggtctccccggtaccaaaggtgaaaaaggagagccctctgtaggagtcgccatcaaaggt
caaaagggagaacctggaattgaaggatttcaaggtttgcagggtccccctggaagagat
ggaccatctggattacctggactaactggtcctgaaggcccaaggggatacgatggactg
attggtatgaagggagaggcaggaaatcctggtcttggcaaaaacggacaaaaaggagac
caaggagaaccaggaagtccaggtccccccggccccccctgtgattctaccaaggaggag
ctgcaacaaggcaacttgacccaaacaggacccaaaggaaacaaaggagagaggggttat
tctggacgagatggattaccaggatctgaaggtcaaaagggagagcaaggatttcctggt
atgaaaggacccccaggaatggatggagagaagggtgtgcctggtatcgctggtccaaga
ggaaaacaaggattacctggtctacctggattacctggattaaagggtgaccgtggaatg
gatgggctacctggattaaatggaattcaaggtgaaaagggcaaccctggtgtacctggt
gtgaaaggagagaagggataccaaggtcccccgggacctagtgggggagaaggtggagat
ggtcctgaaggtcccaagggtgaacgaggtccctctggagaaagaggttaccctgggctg
gatggacttatgggattgcctggatcccctggacgacccggacctcaaggaggtccagga
actcagggacttcctggaccggaaggaccacccggacccaagggaaacaaaggagataaa
ggaaattctggtttacctggaattgatggtttatcaggccagcctggcttacctggagaa
aaaggtaatcccggaccgaaaggaaacgctggagtgtcaatcccaggtgtaaaaggagct
aatggtctgcctggtcgtgatggattacccggaaggaaaggagagaccggatttagagga
ctccctggaattccaggaaactccaccatggggcgccctggacttcctggaccaaaagga
agtaaagggaattctggatttcctggggtgagcggtcgtgagggtctcccaggtcttcct
ggagcgaaaggtgatagaggaggctcctgtagggattgtttacctggactcaaaggagag
aaaggaacatctggacagcccggtacccctggaatccccggggagattgggcgcactggg
gctaagggtgaacccggacttcgtggagacgatggtatacctggattcagtggacagcga
ggagaaccaggtcttcctggtgtacccggtcgtgatggatttaaaggagacaagggagaa
ccatacaagctggagtccgaaagttttaaagatatgtgtaggaaaggggagccaggtcta
cctggacctccaggtgagcagggccttaacggacttccaggtccccagggacctcgagga
atagatggttcaccaggactaccaggacaaaagggagacagaggtgttgacggaagagac
ggaatccctggaaaccctggactcccgggactcattggtcccaaaggaaacccaggaatc
ggtcttcctggaattcctggagaaagaggcatacctggagataatggacttcctggattg
aacggcatgaagggagataagggtatacctggtgagaccatcaacgttaatgtcgatctt
ctgaagggaaccaagggtgagccaggattccctggaaaccccggaattcctggaagagac
ggactacctggacttaaaggagacagaggtgaacctggcctaccaggagttaatggtcta
cctggaatgaagggcgagcgaggatttgatggtattcctggggaggcaggaccaagagga
cttcctggtcctagaggtgatagaggctctgatggaccatcaggatctccagggtttgac
ggacgacctggagaaccaggacctcaaggattacctggagtcaaaggagattctggacag
ccaggaagagacggacgttcttcaattggagagaaaggagattcaggattacctgggcgc
cccggacttcaaggtcagccaggtctccccggacaggatggggttcccggacaagatggt
ctgccaggaatgaagggagacactggtccctctggactttcaggcctgcccggatccccg
ggattaaagggtgaaccaggagttgagggacctgaaggaaccaggggagcccctggagag
gacggtcgtcccggactaccaggtgtggttggagctaaaggaacacctgggctccctgga
gcagatggcttatcaggtattccaggagagagaggagagtcaggcttccccggacaaccc
ggtgcccccggactggacggtccccagggacctcccggactcccaggggagcgaggcaga
gacggatccccaggtcctaagggagagccaggctttgtgggaattccaggggagcctgga
cgagatggaaatgatggacttcctggactgcaaggaatgaagggtgaaaggggattccca
gggatccctggcgagcagggacgtagtggtgaaccaggacaaaagggtgacactggcccc
agcggtctgcctggattacaaggtgtccccggaaatgacggacttcccggagttaaagga
gagtctggtcgcccgggatccccaggatcttcgggactaccaggacaggacggactccca
ggactacctggaatgaagggagatcaagggcccgcaggtgtgggtatccccggtgagtca
ggtatcccaggtgagagaggacgtgatggagcccctggtttacctggaatgaagggagaa
ccaggacagcaaggactcccgggattccctggcatgaagggagagaggggtttccctgga
ccagcaggacagaatggtattccaggaaatgatggactcccaggaatgaaaggaaatcct
ggtttgaatggtgttccaggtagagctggattgaagggtgaacctggtcttaatggaatc
ccgggccgtgaagggcctaagggtgaggcagggttacctggtgtgcccggtgaacgcggc
ccagagggtctgaagggagaaccaggtctcaacggcctgccaggctcacccggcgtagct
ggattacctggaatgaagggagatcgtggcagggatggagtgaacggcttacctggacct
aaaggagattctggattgcctggaagagatggcattaagggtgaacggggatcccctggt
ttcccaggcccagagggaagagagggcttaccgggcatgaaaggagaaagaggacctgag
ggaccatttggagtgaagggagagccaggtcgttccattcaaggaatcaagggagaacca
ggaatacctggagaacagggtcgggatggattcccaggaatgaagggaaatgctggtttg
cctggacagccaggattaccaggaatgaaaggagaccaaggactaggataccctgggcct
cagggtccaaagggagacagtggatttaatggaatcccaggtgaacagggattgactggt
gttcccggagaaccaggacaacccggattccctggtctaaagggagattccggagataga
ggtgtgcccggtcttccaggattacaaggcatgccaggtcctgaaggacctcaaggtgag
ccaggcgtcccaggatcacctggattgccaggtcttaagggagatgctggacttccagga
cgtgatggatttgagggaataaaaggagagagaggaccatctggattacctggagtaagg
ggattgaaaggtgatagaggtttccctggagagaaaggttcaattggaccacaagcaagc
actaagggcatgagaataaagggagagaagggcgagactggggatagaggcagagcggga
ttccccggacttcctggaagcaagggtgatgcaggtttcccaggtcctaagggtttccct
ggtattcctggagagaggggtgtgcaaggattcccaggaatgaagggagagtcaggattc
cccggacagccaggcattcccggagaagatggtttcccaggtgcccagggagctactgga
gacccaggattccccgggcccccaggcaggaccccaccctcaggtttcttggtcgtgcgc
cacagtcagaccgagtcggaaccagagtgccctgacagtacaagtcgcctctggactggt
tacagcttgctgtatattgaaggaaatgagagatctcaccatcaagacttgggctgggct
ggctcctgtatgcagagatttagtacaatgccattcctcttctgtaactccaacaatgtt
tgtaattacgcaagtcgaaacgacaaatcctattggctctccaccaacgaacccatgccc
atgatgccagtccgcgacccagaactgaggcgattcatcagtcgttgtgtggtctgcgat
gcccccgccaatgtcatcgctgtccacagtcaggaaatgtctatccctgagtgtcccatt
ggctggaagggactctggattggatacagttttgctatgcataccggtgcaggtccaagc
ggtgggggacagtccctgtccagccctggaagctgtctggaagacttcagggccacaccc
ttcattgagtgcaacggcagcggcggtacctgccacttctatgccaacaagtacagcttc
tggctgactaccattgatcagagccagaaccagtttgcaactccggttcaagaaacactg
aaggctggcaaccagaggacgagagtgtctagatgccaggtctgcatgaaaaccacaaga
ccttaa
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