Magallana angulata (Portugese oyster): 128179447
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Entry
128179447 CDS
T09348
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128179447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
canu03041
]
128179447
03009 Ribosome biogenesis [BR:
canu03009
]
128179447
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128179447
Spliceosome [BR:
canu03041
]
Complex A
U2 snRNP components
U2 related factors
128179447
Complex B
128179447
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
128179447
Ribosome biogenesis [BR:
canu03009
]
Eukaryotic type
90S particles
Helicases
128179447
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
nSTAND3
AAA_19
Cas3-like_C_2
SRP54
nSTAND_NTPase5
ABC_tran
Flavi_DEAD
T2SSE
AAA_25
HTH_49
TsaE
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
128179447
NCBI-ProteinID:
XP_052702836
LinkDB
All DBs
Position
4
Genome browser
AA seq
727 aa
AA seq
DB search
MSKRRIDVGDSLSQSKRGREDEKEKKDEKSYKSVFEQFGISKPTLQMNPFTGLPYTPKYF
ELLNKRKMLPVWEYKEKFCEILNNHQILVLVGETGSGKTTQIPQWCLEWVRCRYQKKGVA
CTQPRRVAAMSVSQRVSEEMDVGLGQEVGYSIRFEDCTSSKTLLKYMTDGMLLREAMSDP
LLEAYGVVMLDEAHERTLATDILMGLLKEVAKQRGDLKIIVMSATLDAGKFQNYFDNAPL
MTVPGRTHPVEIFYTPEAERDYLEAAIRTVVQIHMCEEGPGDILLFLTGQEEIDEACKRL
QREIDNLGPEVGDMKCIPLYSTLPPNLQQRIFEPAPATKANGAVGRKVVVSTNIAETSLT
IDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTKPGKCFRLYTEKA
YKQEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAAL
DDDGELTELGSMMAEFPLDPQLAKMVIASCDHNCSNEILSITAMLSVPQCFVRPTEMKKT
ADEAKMRFAHIDGDHLTLLNVYHAFKQCQEDPQWCYDNFVNYRSLKSADNVRQQLARIMD
RFNLRRSSTDFASRDYYLNIRKALVSGFFMQIAHLERTGHYLTVKDSQVVQLHPSTCLDH
KPEWVLYNEFVLTTKNYIRTVTDIKPEWLIKVAPQYYEMSNFPMCEAKRQLERIIAKLES
KQYQEGF
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagacgtatagacgtcggtgattccctttcacaaagtaaacgtggacgggaa
gatgaaaaagaaaagaaagatgagaagtcgtacaagtcggtgtttgagcagtttgggatc
tccaagccgacgttacagatgaatcccttcacaggcttgccgtatactccaaagtacttt
gagttactgaacaaaaggaagatgcttcctgtctgggagtacaaggagaaattctgtgag
atcctgaacaatcaccaaatcctcgtgctggttggtgaaaccggcagtggaaaaacaaca
cagattcctcagtggtgtttggagtgggtgcggtgtcggtatcagaagaagggagtggct
tgtacccagcccaggagggtggccgctatgtccgtctctcagcgtgtgtcagaggaaatg
gatgtgggtctcggacaggaagtagggtacagcattcgatttgaggactgcacttcgtca
aagactctactcaagtacatgacagacggtatgttacttcgggaggcaatgtcagaccct
ctattggaagcctatggggtggtcatgctggacgaggcccacgagaggacactggccaca
gacattcttatggggctcctaaaggaggtagccaagcagcggggcgatctcaaaatcatc
gtcatgagtgccaccctagacgccggaaagttccagaattactttgataatgcccctctg
atgacagtgccaggcagaacacatcctgtggagatcttctacactccagaggccgagcga
gactatctggaggctgccatccggaccgtggtccagatccacatgtgtgaggagggacct
ggagacattctgctcttcctcactggacaagaggaaattgatgaggcatgtaaaagacta
caaagagaaattgataacctgggaccagaagtgggggacatgaagtgtatccccctgtac
tctaccctgccccccaatctacaacagcggatctttgagccagcgccagcaaccaaggct
aacggggcggtgggtagaaaggtggtggtgtccaccaacattgcagaaacctcactgacc
attgatggagttgtgttcgtgattgacccagggttcgccaaacaaaaagtatataacccc
aggattcgggtggagtctctcctagtcaccgctatcagtaaggccagtgctcagcagaga
gcagggcgtgccggacgaacaaagcccggaaagtgcttccgtctctacacagagaaagcc
tacaaacaggaaatgcaagataacacataccccgaaattctccgatccaatctgggatct
gtagtgctacaactgaagaagctaggaattgatgatttagtgcattttgatttcatggac
cccccagctcctgaaaccctgatgagagctcttgagttgctgaattacctggctgcgctc
gacgatgatggtgagctcaccgagttgggctcaatgatggccgagtttcccctcgaccct
cagctggccaaaatggtcattgccagttgtgatcacaactgttccaatgagattttgtcc
atcaccgccatgttgtcagtcccacagtgttttgtccgacccacggaaatgaagaaaacg
gcagacgaggccaagatgagatttgcccacatagacggcgatcatctgaccctgttgaat
gtctaccatgcctttaagcaatgccaggaagaccctcagtggtgctacgacaactttgtc
aactaccggtcgctgaagagcgcggacaatgtgcgacaacagctggcccggatcatggac
aggttcaacctccgccgctccagcactgactttgccagtcgggactactacctcaacatc
aggaaagccctggtctccgggttcttcatgcagattgcccacctggagaggacgggtcac
tatctgacggtcaaggacagccaggtggtacagctccacccctccacctgcctggaccac
aagcctgagtgggtcctgtacaacgagtttgtactgaccactaagaactacattaggact
gtgaccgacatcaaaccagagtggttaatcaaggtagctcctcaatattatgaaatgtcc
aacttcccaatgtgtgaagccaagcgacagctggagcgaattattgcaaagttggagagt
aaacagtatcaggaaggattttaa
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