Magallana angulata (Portugese oyster): 128179865
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Entry
128179865 CDS
T09348
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128179865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
canu03041
]
128179865
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128179865
Spliceosome [BR:
canu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128179865
Complex C
U5 SnRNP specific factors
128179865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
Motif
Other DBs
NCBI-GeneID:
128179865
NCBI-ProteinID:
XP_052703482
LinkDB
All DBs
Position
4:13738480..13779455
Genome browser
AA seq
2148 aa
AA seq
DB search
MAGAAARALQYEYKANSNLVLQADRSLIEKRARDEPTGEVTSLVGKIAGTRMGEKAMRSK
PPQMEERKVKRTKRDEAQRDMMKMKGATLLSEGIDDFVGIVYRPKTQETRQTYEVILSFI
QAALGDQPRDVLCGAADEVLQVMKNDRLKDKERKKEVEELLGGLAEERFAVLVNLGKKIT
DWGQEEKMQTDDNIDETYGVNVQFEESEDEFQDDGDVYGEIKEVEEEEDEDEGVEAEYND
TLHTNLAGEDGGNKSDSGLHPRDIDAFWLQRKLSKHYPDDPTMAQTKAGEVLQTLKSASD
DREAENQLVMLLGFDMFDFIKVLRQHRQMILYCTMLAQAQTDEEKKGIEEKMSADTELSG
YLKALGATDKEDLVSEERARRQQARQSRVAADIEAMDVDQSQQKLGEVNLVDIEDLTFSQ
GSRLMANKRCQLPDGSYRKQRKGYEEVHVPELTPKSFETDETLLPIDRLPKYAQPAFVGF
KCLNRIQSRLWKSCMESDQNLLLCAPTGAGKTNVALLCMLREIGKHINADGTINTDEFKI
IYVAPMRSLVQEMVGSFGERLKSYGIRVDELTGDHQLTKEQITNTQIIVCTPEKWDIITR
KGGERTYTQLVRLMIFDEIHLLHDDRGPVLEALVARTIRNIETTQEDVRLVGLSATLPNY
EDVATFLRVDPAQGLYFFDNSFRPVPLEQQFIGITEKKAVKRFQIMNEIVYEKVMEHAGK
NQVLVFVHSRKETGKTARAIRDMCLEKDSLGMFLKEGSMSTEVLRTEAEQVKNLELKDLL
PYGFGIHHAGMAKVDRILVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYNPEK
GRWVELSALDVMQMFGRAGRPQYDTKGEGIMITNHSELQYYLSLMNQQLPIESQFVSRMS
DCLNAECVLGTVQSVKEAVDWLGYTYLYIRMLRAPSLYGVGHDMLKDDPLLQQRRKDLIH
TAALTLDKNNLIKYDKKTGQIQSTELGRIASHYYCTNETIATYNQLLKPTLSEIELFRVF
SLSSEFKHLTVREEEKLELLKLLERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALM
SDMVFVTQSAGRLMRAIFEIVLHRGWAQLADKALALCKMVNKRMWQSMCPLRQFKDKKMP
IEVIKKIEKKNFPFERLYDLDPLEIGEFIRVPKSGKTIHKYVHLFPKLELSVHVQPITRA
TLRVELTITPDFQWSEEVHGTSEAFWILVEDVDSEVILHHEYFLLKSKFAQDEHVVKFFV
PVFEPLPPQYFIRVVSDRWIGAETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRSPA
FESLYSDKFPFFNPIQTQVFNAVYHTDENVFIGAPTGSGKTICGEFAILRMFSQNPDGRC
VYVTPLEPLAQQVYAEWTAKFGGQLGKKVVLLTGETGTDLKLLAKGNIIISTPEIWDVLS
RRWKVRKNVQSVNLFVVDELHLIGQEVGPVLEVICSRMRYMSAHLEHTIRVVALSSSISN
AKDVSQWLGCTPTGFFNFHPNVRPVPLELHIQGLNISHNLSRIIAMAKPTYQAILRHSPR
KPVIIFVPSRKQTRLTAIDILTFSAAEIQVDTETPRSRFLHVKEEDIQPFLEKITDKTLK
ETLSNGVGYLHEGLSDIERKAVEHLFSSGAVQVLVASRSLSWGMSVSAYLVVVMDTQYYD
GKTHSYEDYPVPDVLQMIGRANRPLTDQEGKALIMCQSSKKEFFKKFLYEPLPVESHLDH
CLHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVTHRHLSDHLSELVE
NTVSDLEQSKCISVEDEMDMTPLNLGMIAAYYYINYTTIETFSLSLNNKTKIKGLLEIIS
NAAEYEDVPIRHHEEAILKSLASRLPNKLSNQKYNDPHVKTNLLLQAHLSRMQLSAELQS
DTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWGKDSYLKQLPHFSQDI
IKRCQEKKMESIFDIMEMEDDERNELLQLTDEQMADVARFCNKYPNIEMSFDVQEKEGIH
SGSPVNVLVSLEREDELVGPVVAPFFPQKREEGWWVVIGDNKSNSLLSIRRLTLQQKAKV
KLDFVAPSPGHYNYTIFFMSDAYMGCDQEYKFSIDVKEGESDSESDSD
NT seq
6447 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgcagcggccagagcattgcagtatgaatacaaggcgaactctaaccttgta
ttgcaagctgatcgttcgctcattgaaaaaagagctcgcgatgaacccacgggagaagtc
acttcccttgttggaaagattgcaggaaccagaatgggcgagaaagccatgagatccaaa
cctcctcagatggaagagcgaaaagtcaagagaacaaagcgtgatgaagcacaaagggat
atgatgaaaatgaaaggagcaactttattgtctgaaggcattgacgattttgttggaatc
gtctacagacctaaaacccaggaaacccgacagacgtatgaagttattcttagctttatc
caagctgccttaggtgatcagcctcgcgacgtattatgcggtgctgcagatgaggtctta
caggtgatgaagaatgacagattgaaggacaaagagagaaagaaggaagtagaggagtta
ctggggggactggcagaggagaggtttgccgtacttgtcaaccttggcaagaaaatcact
gactgggggcaggaggagaagatgcagacagatgacaacattgatgagacatatggtgtg
aatgtgcagtttgaagaatcagaggatgaatttcaggatgatggagacgtgtatggtgaa
ataaaagaagttgaggaagaggaagatgaagatgaaggagtggaagctgagtataatgac
accctacacaccaatttggcgggagaagatgggggtaataagtcagactctggcctccac
cccagggacattgatgccttctggctccagagaaagctgagtaaacactacccagacgac
cccaccatggcccagaccaaggctggagaagttctacagactctcaagtctgcgagtgat
gacagagaagcagaaaaccagctggtcatgttgctgggatttgacatgtttgatttcatc
aaggtccttcgacagcacaggcagatgattctgtactgtaccatgttggcacaagctcag
actgatgaagagaagaagggcattgaggagaaaatgtctgcagacacagagttgtcgggg
tacctcaaggccctaggggcgacagacaaggaggacctcgtgtctgaggagagggctagg
cgccaacaagccagacagagcagggtggctgcagacattgaggcgatggatgtagatcaa
agtcagcaaaaacttggagaggtgaatctggttgacattgaggacttgacattcagtcag
ggcagtcgtctgatggccaacaaacgatgtcagctgccagacggctcgtacaggaagcag
aggaaaggttatgaagaagtacatgtacctgagttgacgccaaagtcttttgaaacagat
gagaccctgcttcctatagacagactacctaagtatgcccagcctgcgtttgtgggtttt
aagtgcctgaatcggatacagagccggctttggaagtcctgtatggagtctgaccagaac
ctcttgctgtgtgctcctacgggagctggtaagactaatgtagccttactgtgtatgctg
agggagatagggaaacacattaatgctgatggcacgatcaatacggacgagttcaagatc
atctacgtcgccccaatgaggtcactcgtacaggagatggttggcagctttggagagagg
ctgaagtcgtacggtatccgtgtggacgagttgaccggggaccatcagctgaccaaggaa
cagatcaccaacacccagatcatcgtctgtactcccgagaagtgggacatcatcaccagg
aagggcggcgagcgcacctacactcaactcgtcaggctcatgatattcgatgagattcat
cttctccatgatgacagaggaccagttttggaggctctagtggccagaaccatcagaaac
atagagaccacccaggaagacgtacgactggtggggctcagtgccacactccccaactat
gaggatgtggctaccttcctccgcgtagaccccgctcagggactctacttcttcgacaac
agcttccgccccgtgcctctggagcagcagttcatcggaatcacagaaaagaaagctgtc
aagcgttttcagatcatgaacgagattgtgtacgaaaaagtgatggagcatgctgggaag
aaccaggttttggtgtttgtacactctagaaaggagactggtaagacagcacgagctatt
cgagatatgtgtctggagaaggactcgcttggaatgtttctgaaggaggggtcaatgtcc
accgaggttctcaggaccgaggctgaacaggtcaagaatctagagctgaaagatttgcta
ccctatggatttggaatccatcatgcaggaatggccaaagtggaccgtatcctggtagag
gacctgtttgccgaccggcacattcaggtgctggtgtccacctccaccctggcctggggg
gtcaacctacccgcccacacggtcatcatcaaggggacacagatctataacccagagaag
gggcgctgggtggagctcagtgctcttgatgtcatgcagatgtttggaagagctgggcga
ccccaatatgacacaaagggggaggggatcatgataaccaatcacagcgagctacagtac
tacctgtcactgatgaaccagcagttaccgattgagagtcagtttgtcagtcggatgtcg
gattgcttgaatgcggagtgtgttctgggaactgtacagtctgtgaaagaagcagtggac
tggctgggatacacatatttgtacatcagaatgttacgagcgccgtcgctgtacggtgtg
ggccatgacatgctgaaagatgacccacttctacagcagcgacgtaaagacctgatccac
actgcagccttgaccttggacaaaaataacctgatcaaatatgacaagaagactggtcag
atccagagcacggagctcgggcggatcgccagtcactactactgtactaatgagaccatc
gctacctacaaccagctgctgaagcctacgctcagcgagatcgagttgttccgagtgttc
tcgctgtcatccgagttcaagcacttaacagtcagagaggaggagaagctggagttgtta
aagttactggagagggtacccatcccgatcaaagagagcattgaggaacccagcgccaag
gtgaatgtgctgctacaggcctacatctcccagctgaagttggagggatttgccctgatg
tccgacatggtgtttgtgacccagtctgcggggcgattgatgagggccatatttgagatc
gtcctacacagaggctgggcccagctggctgataaggccctcgccctctgtaagatggtc
aacaagcgcatgtggcagagtatgtgtccactaaggcagttcaaggataagaagatgccc
attgaggtcatcaagaaaatcgagaagaaaaactttccctttgagcgcctctatgacctt
gatcctctggaaatcggagagttcatccgagtaccaaagagtggaaaaactatccataaa
tatgtgcatctgttccccaaactagaactgtctgtgcatgtccagccaatcacaagggct
acactgagagtggaactgaccatcacccctgacttccagtggagcgaggaagttcacgga
acctccgaggcgttctggatcctggtggaggatgtggacagtgaggtcattctacatcac
gagtatttcctgctcaaaagcaaatttgctcaggatgagcatgttgtgaagttctttgtg
cctgtgtttgagccacttcctccccagtacttcatcagggtcgtgtctgaccgctggata
ggtgctgagacccagcttcctgtctcgttccgtcacctgatcctcccagagaagtacccc
ccacccaccgagctcctggacctccagccacttcctgtctccgccctcaggagcccagcc
tttgagagcctctacagcgacaagttccccttcttcaaccccatccagacccaggtgttc
aatgctgtgtaccacacagatgagaatgtgtttattggggctcccacagggagtggaaag
acaatctgtggggagtttgccatcctgaggatgttctcacagaacccagatgggcgctgt
gtgtatgtaaccccgctagagcctctggcacaacaggtgtatgcagaatggacggccaaa
tttggaggacagttggggaaaaaagtggttcttttgacaggtgaaactggcactgacctc
aaacttctggcaaagggtaacatcatcatcagtactccagagatctgggatgtgctgtca
agacgttggaaagtcagaaaaaatgtgcagagtgtcaatctctttgtggtggatgaactc
catctgattggtcaggaagttgggcctgtgttggaggtgatctgctcacgtatgcgttac
atgtcggcccacttggagcacacaatccgagtggtcgccctcagctcctccatctccaat
gccaaggacgtgtcccagtggcttggctgtacccccacagggttcttcaacttccacccc
aatgtcagacctgtgcccctggagctacacatacagggtttgaacatcagccacaatttg
tcccgaataattgccatggccaagcccacttaccaggccatcctgcgtcactcaccaagg
aaacctgtcatcatcttcgtgccatcacggaaacagacacgcttgactgccattgacatt
ttgaccttcagtgctgcggagattcaggttgacacagagacgcctagaagtcgcttcctc
cacgtaaaggaggaagatatccaaccattcctggagaagatcacagacaagactctgaag
gagacgctcagtaatggagtggggtacctccacgagggcctgagtgacatagagaggaag
gcagtggagcatctgttctctagcggtgctgtacaggtgttggtggcctctcgcagtctc
tcctggggcatgagtgtgtctgcctatctggtggttgtcatggatacccagtattacgac
ggaaaaacacactcgtatgaagattatccagtgccagacgtcttacagatgattggtcga
gccaaccgcccactcacagatcaggaaggtaaagctttgatcatgtgtcaaagttcaaag
aaagaattcttcaagaaattcctgtatgaacctcttccagtggagagccacttggaccac
tgtttacatgaccacttcaatgctgaggtggtgacaaagaccatcgagaacaaacaggat
gcggtggactacctgacatggaccttcctgtacagaaggatgacccagaacccgaactac
tacaaccttcaaggtgtgacacacagacatctgtcggaccacctgtctgagctggttgag
aacacagtgtcagatctggaacagtccaagtgtatcagtgtggaggacgagatggacatg
accccactcaatctgggcatgatcgccgcctactactacatcaactacaccaccatagaa
actttcagtctgtctctgaacaacaagacaaagattaaaggtctcctggagattatctct
aacgccgccgagtacgaagatgttcccatcagacaccacgaggaggccatcttgaaatct
ctggccagtcgtctgccgaacaagttgtccaaccagaagtacaacgaccctcacgtcaag
accaacctcctgttacaggcccacctgtcccgcatgcagctgtcagcggagctacagtcc
gacactgaggagatactcagcaaggcaatccgcctgatccaggcctgtgtggacgtactg
agcagtaacgggtggctgagccccgccctagcagccatggaacttgctcagatggtaacc
caggcaatgtggggcaaggactcatatctcaaacagctcccccacttctcacaggacatc
atcaagcggtgccaggaaaagaaaatggagagcatctttgacatcatggagatggaggat
gatgaaaggaatgagcttctacagctgacggatgaacagatggccgatgtggctcgcttc
tgtaacaagtaccccaacatcgagatgtcattcgatgtccaagaaaaagaaggcattcac
agtggttcccccgtcaatgtgcttgtctccttggaaagagaagatgaactagtgggacca
gttgtggcaccattcttccctcagaaacgagaggaaggctggtgggtggtgataggagac
aacaagtccaactcgttgctgtccatcaggagactgaccttgcagcagaaggccaaggtt
aaactagactttgtggccccctcccccggtcactacaactacaccatctttttcatgagc
gacgcctacatgggctgtgaccaggagtataaattcagcattgacgtgaaggagggcgag
agtgacagcgaaagcgacagtgattag
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integrated database retrieval system
