Magallana angulata (Portugese oyster): 128180049
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Entry
128180049 CDS
T09348
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03030
DNA replication
canu03410
Base excision repair
canu03420
Nucleotide excision repair
canu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128180049
03410 Base excision repair
128180049
03420 Nucleotide excision repair
128180049
03430 Mismatch repair
128180049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
canu03032
]
128180049
03400 DNA repair and recombination proteins [BR:
canu03400
]
128180049
DNA replication proteins [BR:
canu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128180049
DNA repair and recombination proteins [BR:
canu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128180049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
Rad17
AAA_30
AAA_16
BRCT_2
AAA_14
RuvB_N
AAA_5
nSTAND3
AAA_33
AAA_19
AAA_18
Motif
Other DBs
NCBI-GeneID:
128180049
NCBI-ProteinID:
XP_052703807
LinkDB
All DBs
Position
1:13480335..13524873
Genome browser
AA seq
1150 aa
AA seq
DB search
MDLRNYFSVKSFKKSNEGEETSTKNEKEGQAEKALNKKSSSSRENGSKSKAPKNQSSKKT
TPQKKNSGPKKDTEKQKKKVYVIDSDSDSEFQKTSQRDKPPSAKKEVSKSKKAKKSQLED
SDDEEVAGKNGKRKRHQVSSDEEDVAISKHKRKSKRNLDSDSEEEKEVKKRHRKESGKKS
KSHVNDSDEEKPKKSTLDIFLKTPSPKKQIKEKEGKSETKAKTPINPLDFLGGDSVKRSD
RTVAAKRTKEESGRSPVVYDVEMHEDDDFQKTLDMADESKPKKVRMKSDVKQASSGSSDS
KPSLASKLAAKVQSSEEIDVIPDTPLSSKSQFTKISEKKDSPKKGKTVSPKKTVPQKTSP
VKFTPKKSPGFSSEAAATPTSEVSKTSSAKASPTKVSPDTPSMAKKGSTYRSYLNREGPR
ALGSKEIPEGGENCLESLTFVITGVLESLERDEAKSLIEKYGGKVTGSISKKTSYLVAGR
DAGESKLTKAQSFGTKQIDEDGLLNLIRTLPGKRSKYELKAEAQIKKESSFSQKVESKPP
VKSLMKESSVTSIGDSQESASSSSRPSGEAIRAGESSLMWVDKYKPTQLKQIIGQTGEKS
NARKLLHWLTNWHKNRAAGTKPQGKFFNKSDDGSGFRAALLSGPPGIGKTTTATLVCKEA
GFSYVELNASDTRSKKSLKGEVAESLDNKTIVDFIGGTNKSTEGKKHCLLMDEVDGMAGN
EDRGGLQELVALIKSSHIPIICMCNDRNHQKMRTLSNYCFDLRFQRPRVEQIKGAMMSVA
FKEGLKIPPPAMNEIILSANQDIRQVLHNLSMWTAGEKNLTYDQAKKDSKNAKKDFKLGP
FDVCRKVFVGGEETAGMTINDKSDLYFHDYNIAPLFVQENYIHVIPFAAKGNVGRHLSLL
ARAADSLCDGDRVDRSIRERQSWNLLPSAAMYASVIPGEYMRGSLPQMVSFPSWLGKNST
TGKTDRILQELRTHMSLSTSANKLSLNLDYLPYLRKFLTQPLVVKENDGIPEVIDLMDKY
DIIKEDFDNILEVTKWPNSDDPMSQLSSKTKAAFTRTYNKEVHMTPYATGTLTKKGRGGG
AATAEDYSMEGEEEGEGTAAVQESDEEEKSDVELDSMIKQTKKPKGKDKAPKEVTAKGKG
KGKGRGKGKS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggatctaagaaattatttcagtgtgaaatctttcaagaagtcaaatgagggagaagaa
acaagtactaaaaacgaaaaggaagggcaagctgaaaaggcactgaataaaaagagttca
tcaagtagagaaaatggctcaaagagtaaagctcccaagaaccaatcttcgaagaaaaca
actccccagaaaaaaaattcagggccgaaaaaagacactgagaaacagaaaaagaaagtt
tatgtgatagacagtgactctgactcagagtttcagaaaacctctcagagagacaagcca
ccaagtgcaaagaaagaagtgagtaaaagtaaaaaagcaaagaagtctcagttagaggac
agcgatgatgaagaagtcgcaggaaaaaatggcaagaggaaacgtcatcaagtaagtagt
gatgaagaagacgtagcaatttctaaacacaaacgcaaatcaaaaagaaatctagactca
gattctgaagaggaaaaggaagttaaaaaaaggcacagaaaggagagtgggaaaaagtca
aagtcacacgtgaatgattcagatgaggaaaaacctaaaaagtcaacactggatatattt
ttgaaaacccctagtcccaaaaagcagattaaggagaaagaaggaaagtctgaaaccaaa
gcaaaaactcctattaatccgttggatttcttaggaggcgactcggtaaagcgatctgat
agaacagtggcagctaaacgcacaaaggaagagtcaggcaggtcccctgttgtgtatgac
gttgagatgcacgaagatgatgacttccagaaaacacttgacatggcggatgagagcaaa
cccaaaaaagtacggatgaaaagtgatgtcaagcaagcatcttcgggttcatcagacagc
aaaccaagtctggcaagcaaattagcagccaaggtccaatccagtgaggaaattgatgta
attcctgatacaccgctctccagcaagagtcagtttacaaagatatctgagaagaaagac
tccccaaagaaaggaaagacagtctcgcctaaaaagactgtcccacagaagacctctcct
gttaagttcacccccaagaagtctcctgggttctcaagcgaggcagcagccacacccaca
tctgaagtgtcgaaaacttccagtgcaaaagcaagtcctaccaaagtatcccctgacact
ccttccatggctaagaaaggtagcacttaccgcagctacctgaacagagagggaccccgg
gcacttggatccaaagaaattcctgagggtggagaaaactgtttggagtccctaaccttt
gtgatcactggcgtgttagaatctctggagcgggacgaggccaagagtttgatagaaaaa
tatggcggaaaagtgacaggaagtattagcaagaaaaccagctatctagttgcagggcga
gatgcaggagaaagcaaattaactaaggcccaaagctttggaacaaagcaaattgatgaa
gatgggttgctgaacttgatacgaacgcttcctggaaagcgatccaagtatgaactaaaa
gcagaggcgcagattaaaaaggaatcgtctttctctcagaaagtagagtcaaaacctcct
gttaagtctttgatgaaagagtcatctgtaaccagcattggagactctcaggagtcggca
tcttcatccagcagaccttcaggagaagcaattagggcgggggagagtagcctcatgtgg
gtagacaagtacaagcccactcagctcaaacagatcatcgggcagactggagagaagagc
aatgccaggaagcttctccactggctcaccaactggcacaagaatcgggccgctggaacc
aagccacaaggtaaattctttaataagagtgatgacgggtcaggattccgagcagctttg
ctgtctgggcctcctggtataggcaaaacaacaacagcaaccctagtgtgtaaggaggct
ggtttttcctatgtagaattaaatgcttcggacacaagatcaaagaaaagtttgaaaggg
gaggtggctgagtcattggataataaaacaattgtggattttattggaggcacaaacaaa
agcacggagggcaagaaacactgtctgctgatggatgaagtggatggaatggcggggaat
gaggaccgaggaggactccaggagctggttgccctcatcaagtcctcacacatccccatc
atctgtatgtgtaacgaccgcaaccaccagaagatgaggaccctctccaactactgcttc
gacctacggtttcagagacctcgagtcgaacaaatcaagggtgctatgatgtctgtagca
tttaaagagggcttgaaaattccacctccagccatgaatgaaattatcttgtcagccaac
caagatattcgacaggttttacataatttgtcaatgtggactgctggagaaaagaatctg
acatacgatcaggccaagaaggattcaaaaaatgccaagaaggatttcaagttgggtcct
ttcgatgtttgtcgtaaagtttttgttggtggtgaagaaacagctgggatgacaatcaat
gataaatcagacctatacttccacgattacaacatagcgcctctgtttgtccaagaaaac
tacatccatgtcattccttttgctgcaaagggtaacgtgggtcgtcacttgtccttgctg
gcccgcgctgcggacagtctgtgtgacggggaccgagtggaccgctctatcagggagagg
cagtcctggaacctactgccctctgcggcaatgtatgctagtgtgatcccaggggagtac
atgaggggcagccttccccagatggtgagttttccaagctggcttggcaagaactcgacc
acagggaagacagatcgaattctccaggaactcagaacacatatgtcattatcaacatca
gcaaataaactgagtcttaaccttgattatctcccatacctgagaaaattcctgacacaa
ccattagtggtcaaagagaatgatgggatacctgaggtcatcgatctgatggacaagtat
gacatcatcaaggaggactttgacaacatcctggaggtcaccaaatggcccaacagtgac
gacccaatgtcacagctcagctccaagacgaaagctgcctttacaagaacctacaataaa
gaggtccatatgaccccctatgcgacgggaaccctaaccaagaaaggtcgagggggtggg
gcagctacagctgaggactacagcatggaaggtgaggaggaaggagagggaacagctgct
gtccaggagagtgatgaagaggagaaaagcgatgtagaactggactccatgattaagcaa
actaaaaaaccaaaagggaaggataaagcaccaaaggaagtaacagcaaagggaaaagga
aaaggaaaggggagaggaaaagggaaaagttga
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