Magallana angulata (Portugese oyster): 128182192
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Entry
128182192 CDS
T09348
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03020
RNA polymerase
canu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128182192
09124 Replication and repair
03420 Nucleotide excision repair
128182192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
canu03021
]
128182192
03400 DNA repair and recombination proteins [BR:
canu03400
]
128182192
Enzymes [BR:
canu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128182192
Transcription machinery [BR:
canu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128182192
DNA repair and recombination proteins [BR:
canu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128182192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EutB
Motif
Other DBs
NCBI-GeneID:
128182192
NCBI-ProteinID:
XP_052706756
LinkDB
All DBs
Position
4:26669790..26706764
Genome browser
AA seq
3184 aa
AA seq
DB search
MAYTADSNAPLRDVKKVQFGILSPDEIRRMSVTDGGIRYSEVTEGGRPKLGGLMDPRQGT
IDRSARCQTCAGNISECPGHFGHIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNP
KIKEILSKSKAYPRKRLVAVYDLCKSRKVCEGGDEMDNAKLGEETQEGDQKKGHGGCGRY
QPKIKRTGLELIAEWKDTNEDSQEKKIVLTADRVHEIFKRISDDECQVLGMDHRYSRPDW
MIVTVMPVPPLAVRPAVVMFGSARNQDDLTHKLADIIKANNQLRRNEQNGAASHIISEDM
KMLQYHVATFTDNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERI
DLRFHPKASDLHLQIGYKVERHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLS
VTTPYNADFDGDEMNLHLPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRK
MTKRDVFLDRGQVMNLLMFLPRWDGHVPQPAILKPKPLWTGKQLFSLVIPGRTNCIRTHS
THPDEEDKGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLAHVVFMEYGWVIAGE
MYGHIQTLVNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIEKAHNDDLEP
TPGNTLRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIAC
VGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMP
TLKPSNRAFERQFKFDATNERNMKKCLSEEVIKDLMGDALAVSQLDREWEQLREDRDILR
SIFPTGDSKVVLPCNLQRMIWNAQKIFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGD
RLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMV
GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLIGQA
ARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEWVNVYYEMPDFDVSKI
SAWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDES
KMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKKRISITEEGE
FKAVAEWILETDGTALMKVLSQRDVDPIRTTTNDIVEVFSILGIEAVRKSIEKEMNHVIS
FDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAASHGE
MDPMKGVSECIIVGQLARIGTGCFDLLLDAEKCKYGMEIPTAIGAGMPGGIGTGLFFGAG
ASPAAGMSPQMTPWQQGATPAYASAWSPGVGSGMTPGAAGFSPSAASESGYSPGYSPAWS
PQPGSPGPASPYIPSPVGGGMSPSYSPASPSYVPSSPAGTPQSPGYSPTITVQLPPATLR
LPRVTHQQAQVTPPLLQAILQQVLHTVLLVHHTARALQATLQLAPVTAQQVQVILRAVQS
TAPQVLPTPQLAPLIPPAHHSTPHHLPNIPPQVLLTPQAVQNTPPTLPLILPLLLTTALL
HLSTVQVLQGTAPVQSIPPHLQPIPPLAPDTLQLALHIPLRVHSTPPLAPRTPQLLPSIP
QPAHAILLTHQGHSKFRQGKRYAAKTFYICEYRTLEAGSLCNAGTIFHIQMLTMPRYDSD
EEKQKRKKKKKKRSRSRSVSSGDSRLSSKHKKSKKSKHHRRSPSSSPERSRRRSRSRSRR
RSPSLERVRYRSRSRSRSRDRYSRRRSRSRDRRSRSYDRRSRSSSRSRRRSRYSRSLSRD
RQRSKRSRSKERRRDKSPKNKATEDIPGFADMTPAEQAQARMHMALKAAAAADEKIKEQL
TGSAAGTGSKTHQEQLQFSNAIKDIESSSFIQSSFVSNRFDKEKTGSKKEEEFSFGTAAE
FKPDMAVKKILEVDDLSKLAHSNLCVDPEVKMDQWVERLKSGFDEMENRQRNHERKARQK
TLTANEDEEDFLSLQRNYKIPKVSAEERECRQMLKDSGFDTKGMTKEEMFEIVQAIRLSK
EDAPGRGTKNPYDMDTQIDHNSQAESGYPENNQSGHTSQEFGQSGEREETVAAALSQSDA
ESIAVENEEEDEEDLFKEQRGRRRSAGRISFRLSPPDVEEELLEDIHAKTDKKESTIKEE
RSRKLSEAFKDSDSIFGKVVKTCKKAAAFLSPGRKTTESPVIIPDSPEHEVQNNPKQESK
VKKASHKRNIIESSDDEDPDFLPEKPKNTPTFKRMKLMTSTKTREDKMDTECPKDEGPRS
LSRAEIELQYFREDLEDKKKCQSFDADNRKAKSWNGRRKTQTRLFAPDIAQVEGYTKVIL
QAFEIYYRKLYLLQSKSRRFVKTGEPVKPGRHMDNTIDVKRRGDRDKAVASSVDDEDLHA
EDDRHSQHSSVHENNVDFMDDGAREMKPEPEKKVTVQRPLRLTKSRRKVNNKVQEAERET
LINNEKEDDDDEMVEVSDKSSQVEDVDVELAEYFVGQDKENHPAVEHRETPEEQFILNRY
SPDILMDEDTFLKLEKKPAPKHHGKKEKQLEFNMKALRNKANKKDIIETDLFERNPIKIP
SSKTKFRRHPSNISTASSDSTSRMEEDFIQELAKKDKVLKMMRSKPAGNEDILFNPHGDV
YATQMCAMEEKHSKEFEGNEEIPNTQMTENYFDMEVEEGKTKEEKKSVDGSKCIEELENS
IDFASGKINSVDEVVIDDSDKEVNFNTKCKLKENSPNQQTTSISNQEGEVKLNIKRRYGL
GKARKIQNIVPKDGAIDFMSTDFEDQKDVKTELDDDWLSARNWKKEKQTVKTYSKRKKAA
ADNTSPPTAQVSEKVPCPMCYQTFDAEHIETHAAECQGEIEDADGGNETPEEENIQEPSS
PSPVKPVKRSVKLCILCEKPLPRGYEQFAHPHCLEEATQAQHMADKGLQNTQEEFEPPRK
TRLRGRSQNSKSATSQNPERTEICQMAAGFVTKGEKYKHQSSESFTAYLLYHYEWESTGG
EPRD
NT seq
9555 nt
NT seq
+upstream
nt +downstream
nt
atggcatatacggctgattccaacgcacctttaagagatgttaagaaagtacagtttggg
atattaagcccagatgaaattcggcgcatgtcagttactgatggagggatcaggtactct
gaagtcacagaaggtggtcggccaaagcttgggggactcatggacccccgccaaggcacc
atagataggtcagcccgatgtcagacttgtgctggaaacatctcggagtgccctggacat
tttggacacatagagctggccaagccagtctttcatattggttttctggtgaaaaccatc
aaaattcttcgatgtgtttgtttcttctgctcaaagctgctggttgacccgaccaatccc
aagatcaaagaaatactgtcaaagtccaaagcctacccacgtaagagattggtcgcagtg
tatgatctgtgcaaatctcgaaaagtgtgtgaaggtggtgatgagatggacaatgctaaa
cttggagaagaaacccaggaaggagatcaaaagaagggacatggaggatgtggaagatac
cagcccaaaatcaaaagaacaggcctagagttgattgctgaatggaaagatacaaatgag
gattcccaggaaaagaaaattgtcttgacggccgacagggtgcacgaaatcttcaagaga
atttctgatgatgaatgccaggtgttgggaatggatcatagatactcccgtcctgattgg
atgattgtcacagtgatgcctgtgccaccattggcagtccgtcccgctgttgtgatgttt
ggctcggccagaaatcaggatgacttgacacacaaactggcagacataataaaagctaat
aaccagttacgacgaaatgaacaaaatggggctgcctcgcacatcatctcagaggatatg
aagatgctgcagtaccatgtagcaacttttacagataatgaacttccaggtctaccaaag
gctgtacaaaaatctggccgtccactgaaatctgttaaacagagattgaaagggaaagaa
ggtcgtgtcagaggcaacttgatgggaaagcgtgtagatttctcggccagaactgtcatt
actccagaccccaatctaagaattgatcaggttggagtgcctcgctccattgcacagaat
atgacatttccagaacttgtcacaccattcaacattgacagaatgcaagagcttgttagg
aggggagccaatcagtacccaggggccaaatacatcattcgtgacaatggtgaaaggatt
gatctgaggtttcaccccaaagctagtgatcttcatttgcagattggttacaaggtggag
agacacatgcaggacaatgactacattgtgttcaacagacagcctaccctccacaaaatg
agtatgatgtgtcacaaggtcaaggttcttccttggtccacattcaggctcaatctcagt
gtaaccactccatacaatgctgactttgatggagatgagatgaacctccacttgccccag
tccttggaaaccaaggctgagatctctaacctggccctggtacccaggatgatcatcacc
cctcaggccaacaggcctgtcatgggtattgtacaggacaccctgacagccgtcaggaaa
atgaccaagagggatgtcttcttggacaggggtcaagtcatgaacctgttgatgttcttg
cccagatgggatggtcatgttcctcagccagccattctgaagcctaaacctctgtggaca
gggaagcagttgttctcgttagtcattcccggacgaaccaactgtatcagaacccacagc
acccacccagacgaagaggacaaggggccgtacaagtggatctccccaggagacactaag
gttctgattgaagatggtatgctgatcagtggcattctgtgtaagaagaccctgggtact
tccagtggctccctggcccacgtggtgttcatggagtacggctgggtgatcgccggcgaa
atgtacggtcacatccagaccttggtcaacaactggctgctgttggagggacacagtatt
ggtattggggacaccattgccgacccccagacctacattgatatccaggacactatcaaa
aaggctaagcatgatgtgatagaagtcattgagaaagcccacaatgatgatctggaacca
actcctggtaacacactgaggcagacctttgagaacatggtgaacagaatcctaaacgat
gccagagacaagacaggaagtaaagctcagaaatctctgtccgactacaacaacttcaaa
gctatggtggtggcaggatccaagggatccaagattaacatctctcaggttattgcctgt
gtagggcaacagaacgtagaaggaaagcgaattccctttggtttccgtcacagaactctg
cctcacttcatcaaggatgattacggtccagagtctagagggtttgtagagaactcgtac
ctggccggtcttacaccctcagagttctacttccacgccatgggaggtcgtgaagggttg
atcgatactgctgtcaaaacagcagaaacaggttacattcagagaagattgatcaaagct
atggaaagtgtgatggtgaaatacgatggaacagtgcgtaatcaggttgaacagttggtc
cagctgcgttacggagaggacggacttgatgcaacgcatgtggaattccagacaatgccc
actctgaaaccgtccaacagagcttttgagaggcagtttaaatttgatgcaacaaatgaa
aggaacatgaaaaagtgtttgtcagaggaagtgatcaaggacttgatgggagatgctttg
gcggtctcccaactggatcgcgagtgggagcagttgagggaggatcgagatattctgcgt
tccatattcccaacgggagacagcaaagtggtgctgccctgtaatttacagagaatgatc
tggaatgctcagaagatattccgtattgacactcataaacctactgatctgcatcctatt
aaagttgttgaaggagttgaggatttatgtaagcgactgatagtggtggctggaggggac
agactcagtatccaggccaatgctaatgctactctgctcttcaagtgtttgataagatct
accctgtgtgccaagcgtgttacggaggagttccgtctcagttcagaagcattcgagtgg
ctcattggagaagtggaatctagattccaacaagctcaggctcatcctggtgaaatggtg
ggagctcttgccgcccagtctctgggagaacctgccacacagatgacattgaacactttc
cattatgctggtgtgtctgccaagaatgtaacccttggtgtgccccgtctgaaggaaatc
atcaacatctccaagaaaccaaaaacaccatctctgactgtttacttgattggacaagct
gcaagagatgctgaaaaggccaaggatgtactgtgtagattagaacacaccactctgcgt
aaagtgacggccaacactgctatctactacgaccctgacccacagaatacagtgatctct
gaggaccaggagtgggtaaatgtgtattacgaaatgcctgactttgatgtgtccaaaata
tccgcttggctactcagaatagaactggaccgaaaaagaatgacagacaaaaaacttacc
atggaacagatctctgaaaaaattacagccggatttggtgatgacttgaactgcatcttc
aatgatgacaatgctgaaaaacttgtccttcgaatcaggatcatgaactctgacgaaagc
aaaatgcagaatgaggaagaaattgtggacaagatggaagatgatgtgttcttgcgttgt
attgaggcaaacctgttgtcagatatgacccttcaaggaattgaagcaattgccaaggtt
tacatgcacttgcccaatacagaggacaagaagaggatctccattacagaggagggcgag
tttaaggctgtagccgagtggattctggaaactgatggtacagctctgatgaaggttctc
agtcagagagacgtcgatccaatccgaacaacaaccaatgacatcgtagaagtcttctcg
atacttgggatagaggctgtaagaaagtctatagaaaaggaaatgaaccacgttatttcc
tttgacggctcctatgtcaattacagacatttgtcactgttgtgcgactccatgacagca
aagggtcacttgatggccatcacaagacacggaatcaacaggcaggaaacaggagctctg
gctcgttgctcctttgaggaaacggtggacattttgatggaggctgcctctcatggagaa
atggacccaatgaagggtgtctctgagtgtattattgtaggccagctggctagaatcgga
acaggttgctttgatctcttgttggatgctgaaaagtgtaaatatggaatggagattcca
actgctattggagcaggaatgccaggcggaattggcactggtttgttctttggagctgga
gccagtcctgctgctggaatgtcacctcaaatgaccccatggcagcagggagctacacca
gcatatgccagtgcctggtcacccggagttggtagtggaatgacccctggagctgcaggc
ttctcaccatctgctgctagtgagagtggatacagccctggctacagccctgcctggtca
ccccagccaggttccccgggacctgccagtccatacattcctagcccagtagggggaggc
atgtcccctagctactctccagcatcgccttcttatgtgccgtcatctcctgctggtaca
ccacagagtccaggatattctcccacaattacagtccaacttcccccagctactctccga
cttccccgagttactcaccaacaagcccaagttactcccccacttctccaagctattctc
caacaagtccttcatacagtccttctagtccatcatacagcccgagctctccaagctact
ctccaactagccccagttacagcccaacaagtccaagttattctccgagcagtccaaagt
acagccccacaagtccttcctactccccaactagcccctcttattcccccagctcaccac
agtactccccatcatctcccaaatattccccctcaagtccttcttactccccaagcagtc
caaaatacacccccaactctccctcttattctccctcttctcctaactacagccctactt
cacctgagtacagtccaagttctccaaggtacagccccagtccaaagtattcccccacat
ctccaacctattcccccactagccccagacactctccagctagcccttcatattcccctt
cgagtccacagtacacccccactagccccacgtacaccccaacttctccccagtataccc
caaccagctcacgctattctcctgacacaccagggtcacagtaaattcagacagggaaaa
agatatgctgcaaagacattctatatatgtgaataccgtactttggaagcaggaagtttg
tgtaatgctggaacaatttttcacattcaaatgcttacgatgcctcgctacgacagtgat
gaggaaaaacagaaacgaaagaagaagaaaaagaagcgttccaggtcgaggtctgtaagt
agtggagacagcagattgtcatcaaagcataaaaaatcaaagaagtcaaagcatcatcga
cgttcaccatcatcctcaccagagaggtcaagacgaagatcaaggtcaaggagcaggaga
aggtcgcctagcttagagagagtgagatataggtcaaggtcaagatctcgcagcagagat
cgttattcaagacggagatctagaagtcgtgaccgaagatccagaagttacgacagaaga
tcacgatcatccagtcgcagcaggcgaagatctcgttattcaaggtcattaagcagagac
aggcaaaggtcaaaaagatcccgttcaaaagagagacgtagggataaaagtcccaaaaat
aaggcaacagaggatattcctggctttgccgacatgacaccagcagagcaggcccaggcc
agaatgcatatggccctcaaagctgcagctgcggcagatgaaaagatcaaggagcagctg
acgggttcagcggcggggacaggaagtaaaacccatcaggaacagctgcagttctccaac
gccatcaaggacattgagagctcctccttcatccaatcttcatttgtctccaacagattt
gataaagaaaagacaggttcaaaaaaggaagaagagttttcttttggcacagctgctgag
tttaagcctgacatggcagtgaagaagattctggaggtggatgatctgtcgaaactagct
cactccaatctgtgtgttgatcctgaagtcaaaatggaccaatgggttgagagactgaag
tcagggttcgatgaaatggagaacaggcagcggaatcatgaaagaaaagctagacaaaag
accttgacagcaaatgaagatgaagaggactttttatcacttcaacggaattacaaaatt
ccaaaagtctcagcagaagaaagagaatgcagacagatgttgaaggatagtggatttgat
acaaaagggatgacaaaagaggaaatgtttgaaattgtgcaagcaataagactctctaag
gaagacgcaccagggagaggcacaaaaaacccatatgatatggacacacagatagatcac
aattctcaggcagagtcaggttatccagaaaacaaccaatcaggacacacatcacaggaa
tttggccaatcaggagaaagagaggagactgttgcagcagcattaagccaatcagatgca
gagagtattgctgtggaaaatgaggaagaagatgaagaggatcttttcaaagaacagagg
ggaagacggaggtcagcaggaagaataagttttagactgtcacctccagatgtggaagag
gaattgctggaagatattcatgctaagactgataaaaaagagagcactataaaggaggag
agatctaggaaattgtcagaggcattcaaagattctgatagcatatttggcaaggtagtg
aagacatgcaaaaaagcagctgcatttttgtcacctgggagaaagacaactgaaagtcct
gtcatcattccagattccccagaacatgaagttcaaaataaccctaaacaagaatcaaaa
gtgaagaaggcatctcataaacgaaacattattgagagcagcgatgatgaagacccggac
tttctcccagaaaaaccaaagaatacccctaccttcaaaagaatgaaactgatgaccagc
accaaaaccagggaagataagatggacactgaatgcccaaaggatgaaggtccaaggtca
ttgtctcgggccgagattgagctgcagtatttcagagaggacctcgaagataaaaagaaa
tgccagtcatttgatgcagataacagaaaagccaaaagttggaatggcagacgtaaaacc
cagacccgtctatttgcaccagacattgcacaggtagaaggctacaccaaagtgatcctg
caagcctttgagatttactacagaaagctctatctactgcagtccaagtctaggaggttt
gtgaagacgggagaaccagtcaagccagggcggcacatggacaatacgatcgacgtgaag
cgacgaggagacagagataaggccgtagccagttctgtcgatgatgaagatcttcatgcg
gaggatgatagacacagtcagcattcttccgtccatgaaaataatgtggatttcatggat
gatggagccagagagatgaaaccagaaccagaaaagaaagtaacagtacaaagacctctt
agactgacgaaatcaaggagaaaggttaataataaagtgcaggaagctgagagggaaacg
ttgattaataatgaaaaggaggatgatgacgatgagatggtggaggtgtcagataaaagt
agccaggtggaagatgtggatgtggagttggcggaatactttgtggggcaagataaagaa
aatcatccagcggttgagcatagggaaacacctgaagaacaattcattctaaacagatat
tctcctgatatattaatggatgaagacactttcctgaaacttgagaagaaacctgcccct
aaacaccatggaaaaaaagaaaaacagttagagttcaacatgaaagcacttagaaataag
gccaataaaaaagacatcattgaaactgatctgtttgaaagaaacccaattaaaatacct
tcttcaaagaccaaattcagaagacatcccagtaacatcagcactgccagttcagattca
acatcaagaatggaggaggactttatccaagaattagctaaaaaagacaaagtgttgaag
atgatgaggtcaaaacctgcaggaaatgaggatatattgttcaatccgcatggagatgtg
tatgctacacaaatgtgtgcaatggaagaaaagcattctaaagaatttgagggcaatgaa
gaaattccaaatacgcaaatgaccgagaattattttgatatggaagtggaagagggtaaa
actaaagaagaaaagaaatcagttgatggttcaaagtgtattgaagagttggaaaattct
attgattttgcttctggtaagatcaattctgttgatgaggtcgtaatagacgactctgat
aaggaagtaaacttcaatacaaagtgcaaattgaaagaaaacagtccaaaccaacaaaca
acaagcataagtaaccaagaaggagaggtcaaactcaacattaagagaagatatggtctg
ggcaaagcaaggaaaatccagaatatagttccaaaggacggtgccatagatttcatgtcc
actgatttcgaggaccaaaaagacgtcaaaaccgagttggatgatgattggctttcagcc
aggaattggaaaaaggaaaagcagactgtaaagacatactccaaaagaaagaaagcagct
gcagataataccagcccacctacagcacaggtgtctgaaaaggtaccttgcccgatgtgt
taccaaacgtttgatgctgaacatatagaaacgcatgcagcagagtgccagggagaaatt
gaggatgctgatggaggaaatgagactccagaggaggaaaatatccaagaaccttcatca
ccatcacctgtgaagcctgtgaaaaggtctgtaaagctttgtatattatgtgagaagccg
ttgcctcgtggatatgaacagtttgcccaccctcattgtttggaggaagccacccaggcc
cagcacatggctgataaaggtttacagaatacacaggaagaattcgagcctccgcgcaaa
actaggttaagggggaggtctcaaaattcaaaatctgccaccagccagaaccctgaaaga
acggaaatatgtcaaatggctgcgggctttgtgaccaaaggtgaaaaatacaaacaccag
tcgtccgaaagttttaccgcctacctcctttatcactacgagtgggaatctactggaggg
gaaccacgagactga
DBGET
integrated database retrieval system
