Magallana angulata (Portugese oyster): 128186577
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Entry
128186577 CDS
T09348
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128186577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
canu03041
]
128186577
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128186577
Spliceosome [BR:
canu03041
]
Complex C
Other components
Step II factors
128186577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
SRP54
T2SSE
ATPase
AAA_30
ABC_tran
AAA_16
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
128186577
NCBI-ProteinID:
XP_052712363
LinkDB
All DBs
Position
6:complement(12272624..12307773)
Genome browser
AA seq
1232 aa
AA seq
DB search
MMTSYIDPDDDPTLHRLEGLENQKGGLVIMKKKTSGDESHKFKKPALPKVSLLGLDRLAK
EKRKALEEEDIVKKKSKVSSYTDDKDEDSESDEDDSDDNSDMSRRDRKERNYRQSRVETP
SHPGGISREARNRQEEKRQRDRDRGLHVSSKDKRRDDRRDQDRNYSRDRDRDRDRRRDRD
RRRDDRSSRSHRSDRSDRSAREWDETPKRFRDSPATPDIRVKDTPSRTAWEDEDDDATPL
KRSSWDLPTPLSRDPDDRSERSFTSSHRGSKDRRKRSDETPLPTPSYKYNTWMKNKKKIP
YTPKMDEKGKVDVEKMTEEEREDWEMEQKRLDREWYGLDEGYDDDHNPFSGMSTDYTKRK
EEEVEKKKKKKMTARQAQHQRDNELWETNRMMRSGVVVRTNFDEDFEDDNEARVHLLVHN
IVPPFLDGRITFTKQPEPVVPVKDPTSDMAQVARKGCAVVRIHRDQKEKRKAQKKEWELA
GTKIGEIMGVKKEEEKADKTLENGDLDYKADHKFADLLKDKSEAVSEFAKRKSIAEQRKY
LPIYAIRNELLNVIRDNNVIVIVGETGSGKTTQLTQYLHEDGYTKYGMVGCTQPRRVAAM
SVAKRVSEEMGVELGQDVGYAIRFEDCTSEKTVIKYMTDGILLRESLRESDLDNYSAIIM
DEAHERSLNTDVLFGLLRDVVARRHDLKLIVTSATMNADKFANFFGNVPTYTIPGRTFPV
EIFFSKNVVEDYVDSAVKQSMQIHLTGMKGDILVFMPGQEDIEVTCELLAERLGELDEAP
PLAILPIYSQLPSDLQAKIFEKAPDGVRKCIVATNIAETSLTVDGIMFVVDAGYCKLKVF
NPKIGMDALQIFPISQANANQRSGRAGRTGPGHCYRLYTQRQYKDELLTNTVPEIQRTNL
ANVVLLLKSLGVQDLLQFHFMDPPPQDNILNSMYQLWITGALDNTGSLTPLGRQMVEFPL
DPSLSKMLIVSLDMGCSAEILIIVSMLSVPAIFYRPKGREEDSDNAREKFQVPESDHLTF
LNVYQQWKRNGYSATWCNEHFIHIKAMRKVREVRQQLKEIMDQQKMELVSCGNEWDIIRK
CICSAYFHQAARLKGIGEYVNVRTGMPCHLHPTSSLYGMGYNPDYIVYHELVMTVKEYMQ
CVTAVDGHWLAELGPMFYSIKDSTKSRQERKKIAEDEKSAMEDEMKRATDLIRARKEEQE
KKEAAYIKRREIATPGRSEPSTPRRTPAKFGI
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgatgacaagttacatcgatccagatgatgatcccactcttcatagactagaggggctg
gaaaatcaaaagggagggctggttataatgaaaaagaaaacgtctggggatgaatctcac
aaattcaagaaacctgctctgccaaaagtttcattgttgggtttagacagactagctaaa
gaaaagcgcaaagcattggaagaggaagacattgtcaagaaaaaatcaaaagtatcatca
tatacagacgacaaagatgaggacagtgaaagtgatgaggatgatagcgatgataattca
gatatgagtagaagggacagaaaagaaagaaattacagacagtctcgagtagaaacacca
tctcatcctggtggcattagtcgagaggctagaaatagacaagaggaaaaaaggcaaaga
gatagagacagaggactgcatgtctcctccaaagacaaacgacgagatgacaggagggat
caagacagaaactactcacgagatcgagatagagacagagaccgtcggagagacagggat
cgtcgccgagatgacagaagtagcagaagtcaccgcagtgacaggagtgacaggagcgcc
agggaatgggacgagactcccaagaggttcagagatagtcccgccaccccagatatcagg
gttaaagacacgccatcacgtactgcctgggaagatgaggatgatgatgccacaccactg
aaacgatccagttgggatttacccactccgttaagtcgtgacccagatgataggagtgaa
cggagttttacctcatcacaccgtggcagtaaagaccgcaggaaaaggtctgatgaaaca
ccattaccaactccatcgtataaatacaatacttggatgaaaaataaaaagaagatacca
tacacacctaaaatggatgaaaaaggtaaagtagatgttgagaagatgacagaggaagaa
agagaggactgggaaatggaacagaagcgactcgatcgggagtggtatggacttgacgaa
ggttacgacgatgaccacaacccgttctctggaatgtccactgactacactaaacgcaag
gaggaagaggtggagaaaaagaagaagaagaagatgacagccagacaggcacagcaccag
agggacaatgaattatgggagaccaacagaatgatgaggagcggtgtggttgtcaggact
aattttgatgaggattttgaggatgataacgaggcaagagttcatttgttggttcacaac
attgttccaccatttcttgacggccgcatcacattcactaaacagcccgagcctgtcgtc
cctgttaaggaccctacttctgacatggcccaggtggctaggaaaggttgtgccgtggtt
cgaatacacagagaccagaaagaaaaaagaaaggctcagaagaaagaatgggaattggca
ggaactaagataggagaaattatgggagtcaaaaaggaggaggaaaaggctgacaagacc
ttggagaatggggatttagactacaaggccgaccacaagtttgcggatctcctcaaggac
aaatcagaggcggtcagtgagttcgctaagagaaaatccatcgctgaacagaggaagtac
ctgcccatctacgccatcagaaatgagcttctgaatgtgattagagacaataatgtgatt
gtcattgtgggagagacaggatcagggaagacaactcagctgacgcagtacctccacgaa
gatggctacacaaagtatggtatggtgggctgtactcagcccaggagagtggcagccatg
tctgtcgctaagcgggtctccgaggaaatgggggtggagctaggacaggatgtgggatac
gcgatccgttttgaggactgcacatcagagaaaactgtcattaagtacatgacagatggt
attttgctgagagaatctctgagagagtctgacctggataactacagtgctatcataatg
gacgaagctcacgaacgctcactcaatacagatgttttgtttggactccttagggatgtt
gtggccagacgtcatgacttgaagttgattgtgacatcagcaacaatgaatgctgataag
tttgccaacttctttggcaatgtgccaacttataccattcccggccgaactttcccggtg
gagattttcttcagtaagaatgtggtggaggactatgtagactcagccgtcaaacagtcc
atgcagatacacctcacagggatgaaaggagatatattggtatttatgccagggcaggag
gatattgaagtaacttgtgaactgttagcagaacggcttggggagctggatgaagcccct
ccattagcaatcctccctatctactcccagctacctagtgacctccaggccaagatcttt
gagaaagctcctgatggagtcaggaagtgcattgtggctacaaacattgccgagacctct
ctcacagtggatggaatcatgttcgtggtagacgctggctactgtaagcttaaggtcttc
aatcctaaaatcggtatggatgctctccagatcttccccatcagtcaggccaatgccaac
cagcggtcagggagggcaggcaggacaggccccgggcattgctatcggctgtacacacag
agacaatacaaagatgaattactgaccaacacagtgccagaaatacagaggacaaacctg
gccaatgttgtgctgctgttgaagtccctgggtgttcaagatctgttacagttccacttt
atggacccgcctcctcaggacaatattctgaactctatgtaccaactgtggatcacgggg
gccctggacaacacaggatccctgacccccctgggcagacagatggtggagttccccctg
gacccctccctgtctaagatgttgattgtctccctggacatgggctgcagtgctgagatt
ctgattatagtgtccatgctgtcagttccggccattttctatcgacctaaaggtcgggaa
gaggattccgacaatgccagggaaaagtttcaggttccggagagtgaccatttgacgttc
ctgaatgtgtatcaacagtggaaaagaaatgggtattctgccacctggtgcaacgaacac
tttatccacataaaggccatgagaaaggtaagagaagtaaggcagcaacttaaggaaatc
atggaccaacagaaaatggagcttgtgtcgtgtggcaatgagtgggatatcatccgcaag
tgtatctgctctgcttactttcaccaggcagccagactcaagggtattggagagtatgtc
aatgtgaggacaggaatgccctgccacctccacccgacaagttcactgtacggcatgggc
tacaaccccgactacattgtgtaccacgaactggtgatgacagtcaaggagtacatgcag
tgtgtgacggctgtggacggccactggctggccgagctaggaccaatgttctactctatt
aaagactccaccaagtcacgacaggagaggaagaagatcgcagaagatgagaagagtgcc
atggaggacgagatgaagagagccacggacctgatcagggcccgcaaagaagagcaggag
aagaaggaggcagcttatattaaaagaagggaaatagcaaccccaggaagaagtgaacct
agtaccccccggagaaccccagccaagtttggaatctag
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