Magallana angulata (Portugese oyster): 128186952
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Entry
128186952 CDS
T09348
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128186952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128186952
03012 Translation factors [BR:
canu03012
]
128186952
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128186952
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128186952
Translation factors [BR:
canu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128186952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
nSTAND3
AAA_19
AAA_22
ResIII
AAA_14
ATPase
NPHP3_N
TsaE
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
128186952
NCBI-ProteinID:
XP_052712898
LinkDB
All DBs
Position
6:complement(23284945..23300740)
Genome browser
AA seq
1101 aa
AA seq
DB search
MYKRQFLEKILSNGLKSDCIIKLPYSMSWHGRRGGWRDDHENRDRQQHRGYRDGPRGHDR
YTDNNDEGQGEAPLHNDRWRNRGYGRPGYGRGRGRNNDNKGGGRRGGRPEGLRGRDIGMF
YAARSKAKMKEREFQERPLVAMETSDMTKIQRVLDLVKDSPEERESGTELRQRPVTAPQK
TTSITWQNRHEGRPSSSRGASNVIEEPGGLESTKSTEEKEDSATSSVKEEEEEGLILPNM
EEIKELSEEIEQILPSDFDFEFEEEIESQPYLNASFKEEMEEKMKSSKYMKMLSSRKRLP
AYKQRQEIIDLVNSNQIIVLSGETGCGKTTQVPQFILDDYIEKGKGSLCNVVCTQPRRIS
AISVAERVADERAEKQLEQSSVGYSIRLENRLPRKNGSILFCTTGIILRRLESDPKLKSV
SHIIIDEVHERDLLCDFLMVVVKDLVALRPDLRVIVMSATLNAEKFSQYFNNCPHINIPG
FTFPVKQHFLEDVIQLTKYRPDPEPTQRHKSRRYPKWKKYMMEEEEQEEWNMKAWARNLP
TDQYSPTTISALTQIDTKKINLDLVMELLRHIVNKMEDGAVLVFVPGWKEISDLNKLLLE
DSRINSRDLRIVPLHSLMPTVNQRDIFERPPAGIRKIVIATNIAETSITIDDIVYVIDCG
FVKVKDFNPEKGLQTLESFPVSRANAQQRKGRAGRVQAGHCFHLFTSLQYAEMKEYIAPE
ILRTRLEELCLMIKILKLGKIESFVNKALDVPSAEAVKAAIVNLQNLQALDDNEELLPLG
YHLARLPLDPHTGKMILFSAMFGCLDPICLIAACLNFKSPFFTPLGKEAQADRCRKALAG
DSPSDHIMLLKAFKKWEIASRNGNGRKFCYDNFMSENVCKMLMKMKKQFAELLYNIGFVN
SLDPRNKVANIHSDNENLITAVICAGLYPNIAKVHRVAKPNRSTVSVILQNGTKGYLHKG
SVNANETYFPSKWLIYHKVMKTMAVNVYDCSVVSPYPLLFFGGKISFSVTNVKGRDRECV
EIDGWIPFWTERATYDLVKDLRKQLDKILEDRIVSPRVVDLTVSSKEQVIINAIVDLISK
EEVTHHDFRDDDQWDSNEVDY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgtacaagagacaatttcttgaaaagatattgtcaaacgggttgaagtctgattgtatc
attaaattaccatacagtatgagctggcatggacgaagaggtggatggcgagatgaccat
gagaacagagacagacagcagcatcgtggttatagggatggacccagggggcatgacaga
tatacagataacaacgatgagggacaaggggaagctcctctacataatgacagatggaga
aatcgtggttatggtagaccaggctatgggcgggggcgtggtaggaacaatgacaacaag
ggcggtggaagaagaggaggcagaccagaagggctcaggggacgagatattggaatgttt
tacgcagctcgaagcaaggcaaagatgaaagaaagggagtttcaagaaagaccccttgtt
gccatggaaactagtgacatgacaaaaatccaaagagtattggatttggtcaaggatagc
ccagaggaaagggagagtggaacagagttgaggcagagacctgttacagccccacagaaa
acaacatccataacttggcagaatcgtcatgaaggaagaccctcttcatcaaggggggcc
agcaatgtcatcgaagaacctggtgggctggaatcaacaaagtcaacagaggaaaaggag
gacagtgccacttctagtgtgaaggaagaggaggaggaggggcttattctacccaatatg
gaggagatcaaggagctttctgaggagatcgaacagattttaccgtcagactttgatttt
gagtttgaggaagagattgaatctcagccttatcttaatgcaagctttaaggaagagatg
gaggaaaaaatgaagagttctaaatatatgaaaatgttatcaagtaggaaacgcctacct
gcttacaaacagcgacaggaaatcattgatctcgttaactcaaaccagatcattgtgtta
agcggtgaaacagggtgtggtaaaactactcaggttccacaatttatattagacgattac
attgaaaaaggcaaagggtctttatgcaatgttgtttgtacccagccacgaaggatatca
gctatttcagttgctgagagagttgctgatgagagagcagaaaagcagttagagcaatca
tctgtaggctactccataagattagaaaaccgtttaccaagaaaaaatggctccattttg
ttttgtaccacaggcattatccttagaagactagagtctgatccaaagttgaagtctgtg
tcccacatcatcattgatgaggtgcacgagcgggaccttctctgtgacttcctgatggtg
gtcgtgaaggacttggtggctctccgtccagacctgcgtgtcattgtcatgagcgctacc
ctcaatgcagaaaaattctcacagtactttaataactgtcctcacatcaatattcctgga
tttaccttccctgtcaaacaacatttcctggaagatgtgattcagcttacaaagtataga
cctgatccagaacccacccaaagacataaatctagaagatatccaaaatggaagaagtat
atgatggaggaggaggaacaagaggagtggaacatgaaggcctgggccagaaatctgccc
accgatcaatactctcccaccacaatatcagcgctgacgcagatagatacaaagaaaatt
aacttggatcttgtcatggagctattgcgtcatattgttaacaaaatggaggatggagct
gtgttagtttttgttccaggatggaaagaaatatcagatttgaataagcttttattggaa
gattcacggataaattctagagatctgcgcattgtgcctcttcactctctgatgcccact
gtgaaccaaagagacatttttgaaagacctcctgcaggaattcggaaaattgtcattgct
accaacatagcagagacaagtataactattgatgatattgtgtatgtcattgactgtggc
tttgtgaaggtcaaggactttaacccagaaaaaggacttcagactttggagagttttcct
gtatcacgtgctaatgctcagcagcgcaaaggcagggctgggagagtgcaggccggccac
tgtttccatctgttcacaagccttcagtatgcagaaatgaaggagtacattgctccggag
atactaaggaccagattagaggagctttgtttgatgataaagatactgaaattgggaaag
atagaatcttttgtcaacaaggctctagatgttccttctgcagaggccgtgaaagccgcc
attgtcaacctacaaaatcttcaagctttggatgacaatgaagagttgcttcccttgggg
tatcacctggctcgacttccacttgaccctcacactggcaaaatgatcctgttttctgcc
atgtttggctgtctggatcctatctgcctgattgctgcctgcctcaatttcaagtcacct
ttttttacccctctgggcaaagaagctcaagcagatagatgcaggaaagcccttgctgga
gacagccctagtgatcatatcatgctgcttaaagccttcaagaaatgggaaattgcttca
aggaacggaaatggtagaaagttttgttatgataatttcatgtctgagaatgtatgcaag
atgttgatgaaaatgaaaaagcagtttgcagagctgttgtataatattggatttgtaaac
tctctagatccaagaaataaagtagctaacattcattcagacaatgaaaacttgataact
gctgtgatatgtgctgggctttatcccaatattgccaaagttcatagagtcgccaaacct
aacagaagcactgtgtcagttattctgcagaatggaaccaagggttacctccataaaggg
tctgttaatgccaacgagacatattttccatcaaaatggctgatttatcacaaagttatg
aaaacaatggcagtgaacgtttatgactgtagtgtggtttcgccataccctttgctattc
tttggcggcaaaatttcattctctgttacaaatgtgaaaggaagagacagagaatgcgtg
gaaattgatggttggatccccttttggaccgagagagcaacttatgatctagtcaaggac
ctaaggaaacagttggataaaattctggaggacagaattgtgtcaccacgggtggttgat
ctgacagtcagctccaaggaacaggtcatcattaacgccatcgtcgacctcatctcgaag
gaggaggtcacccatcacgacttcagggacgacgatcaatgggactctaatgaggtggat
tactga
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