Magallana angulata (Portugese oyster): 128187825
Help
Entry
128187825 CDS
T09348
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03030
DNA replication
canu03420
Nucleotide excision repair
canu03430
Mismatch repair
canu03440
Homologous recombination
canu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128187825
03420 Nucleotide excision repair
128187825
03430 Mismatch repair
128187825
03440 Homologous recombination
128187825
03460 Fanconi anemia pathway
128187825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
canu03000
]
128187825
03032 DNA replication proteins [BR:
canu03032
]
128187825
03400 DNA repair and recombination proteins [BR:
canu03400
]
128187825
Transcription factors [BR:
canu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
128187825
DNA replication proteins [BR:
canu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
128187825
DNA repair and recombination proteins [BR:
canu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
128187825
MMR (mismatch excision repair)
128187825
DSBR (double strand breaks repair)
HR (homologous recombination)
128187825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
128187825
NCBI-ProteinID:
XP_052714409
LinkDB
All DBs
Position
6:41449122..41458859
Genome browser
AA seq
622 aa
AA seq
DB search
MSNPTLSSGALEAIINGQNFDKPVLQVISSKKITAQGSSADRYRLLLSDGEVSYSHAMLA
TQLNSLMDGELDNLAVIQVDKYLCNTIQGDRRVMILLDLHVLQRGSEVGQRIGNPQQYKA
AATQGTTAEHNSAQCPPQMPKQEGGGQSFIGTVSDKQVNNNIKKENMNGNSKGGYSLKTN
NSGGTPGGTSRVHKIDSLTPYQNRWKIRARVTQKSGIRTWSNSRGEGKLFSVTLTDDSAE
IRATGFNDAVDKFYELLEVNKVYYFSKATLKTANKQYTTVQNDYEMTFNPDTIIEPCDDD
SSLPTMNFNFVKINELESKAPTSLIDVIGVVKNCGDVTTIIGKQSQKEITKRDLQIVDQS
GMSVNLTLWGADAQQFDGSGHPVIAVKGAKVSDYGGRSLSAMASSQIIHNPDLREGHMLK
GWFEHDGHNMDFHGYKNDGMGGGGGGSTNWKCFAEIKSENIGADKPEYFTTKATVLFLRK
ENCMYQACPTESCNKKVVDQGNGMYRCEKCAREFPNYKWRMILSANLGDYSDNQWVTCFQ
ESAEAMLGIKADDLGALKDSNEQAFDQVFTDACFKSYIFKFRAKVETYNDESRLKTVTMN
ASTIDFKEQSQRLIEEIKKLQM
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccctactcttagttcgggagcgcttgaggctattatcaacggacaaaatttt
gataaaccagtacttcaagttattagctccaagaagataacggcccaggggtctagtgca
gacagataccgattgttgctctcagatggagaagtcagttattcacatgctatgttggcc
acacagctgaacagtttaatggatggagagttggacaacttggcagtgatacaggtggac
aagtacctgtgtaacacaatacagggagacaggcgtgtgatgatcctattggatttgcat
gtgttacagcgtgggtcagaagtgggacagaggataggaaatcctcagcagtacaaggct
gcagcaacacagggcaccactgccgaacacaattctgcacaatgtccaccacaaatgcca
aaacaggagggaggtggtcaaagctttattggcactgtatctgacaagcaggttaacaac
aatatcaagaaagaaaacatgaatggaaattcaaagggaggttactctttaaaaacaaat
aattcgggtggtactccaggcggaacatccagagtacataaaattgacagcctcactcct
tatcaaaacaggtggaaaattagggctcgtgtcacacagaagagtggaattcgaacctgg
tcaaactcaagaggggagggcaaacttttcagtgtcaccctaacagatgattctgcagag
attcgagccactggattcaatgatgctgttgataaattttatgaattgctggaagtcaac
aaggtgtactactttagtaaagccactctgaagacagcaaacaagcagtatacaacagtt
cagaatgactacgaaatgacctttaacccagacaccattattgaaccatgtgatgatgat
agcagtctacctaccatgaatttcaactttgtcaaaatcaatgagcttgaaagcaaggct
ccaacctcccttattgatgtgattggagtggttaagaactgtggggatgtgaccaccatt
atcggcaaacagagtcagaaggagatcaccaagcgtgacctccagatagtggaccagtca
ggaatgtcggtcaatcttacactgtggggagcggatgctcaacagtttgatggttcaggt
cacccggtcattgctgtgaaaggcgcaaaggtctcggattatggaggacgatccctttct
gctatggcctccagtcagatcatccacaaccccgacctgcgggagggacacatgctgaag
ggctggttcgagcatgatggtcacaatatggacttccacggctacaagaatgacggaatg
ggaggtggtgggggaggttcaacaaactggaagtgctttgcagagatcaagtctgaaaac
attggtgcagataaaccagaatatttcactaccaaagctacagttctcttcttgcgcaaa
gaaaattgcatgtaccaggcatgtcctacagaatcctgtaataagaaggttgttgaccag
ggcaatgggatgtacagatgtgagaaatgtgctagggagttccccaactacaagtggagg
atgattttatctgctaacctaggagactactcagacaaccagtgggtgacttgtttccag
gagtctgcggaagccatgctggggatcaaagctgatgacctcggtgctctcaaggactct
aatgagcaagcatttgatcaagtgttcacagatgcttgttttaaatcctatatttttaag
ttcagagcaaaagtggaaacttacaatgatgaaagcagattgaaaactgtcacaatgaat
gcaagcaccatagactttaaagagcaatcgcaaaggttgatagaggagataaagaagtta
caaatgtga
DBGET
integrated database retrieval system
