Magallana angulata (Portugese oyster): 128192016
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Entry
128192016 CDS
T09348
Name
(RefSeq) ATP-dependent RNA helicase me31b-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128192016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128192016
03036 Chromosome and associated proteins [BR:
canu03036
]
128192016
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128192016
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128192016
mRNA degradation factors
5'-3' decay
Decapping complex
128192016
Chromosome and associated proteins [BR:
canu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128192016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
128192016
NCBI-ProteinID:
XP_052720368
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All DBs
Position
7:59776428..59787630
Genome browser
AA seq
447 aa
AA seq
DB search
MASATIEQNSGNHTNSSDAKTGDSTGWKSKLNLPPKDLRVRTSDVTNTKGNEFEDFCLKR
ELLMGIFEKGWEKPSPIQEASIPIALTGRDVLARAKNGTGKTGAYTIPILEKADPSRDEV
QSLVIVPTRELALQTSQICIEISKHLGLKVMVTTGGTNLKDDIMRLYEPVHVIIATPGRI
LDLMNKNLVKIGKCGMLVLDEADKLLSQDFKGMLDHIIAHLPPDRQILLYSATFPLTVEQ
FMRKHLNNPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQSIIFCNSTQR
VELLAKKITELGYSCFYIHAKMNQQHRNRVFHDFRQGLCRNLVCSDLFTRGIDIQAVNVV
INFDFPKHAETYLHRIGRSGRFGHLGVAINLITYDDRFALHKIESELGTEIKPIPKNIDK
SLYVAEFHMMNDHEEGGDTHSQRGGGH
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggctactattgagcaaaactctggtaaccataccaattcttcagatgcaaaa
acaggagattctactggatggaaatctaagctgaatctcccaccaaaagacttgcgagtc
agaaccagtgatgtaacaaacaccaaaggaaatgagtttgaggacttctgtttgaagcga
gaacttctaatggggatttttgagaagggatgggaaaaaccgtctcctattcaagaggct
agcatacctattgctctaacaggaagggatgtattggctcgggcgaaaaatggcacagga
aaaacaggagcctacactattccaattttggagaaggcagacccaagtagagatgaagtt
cagtctctggtcatcgtgcccacccgagagctggctctccagaccagccagatctgcatt
gagatcagtaaacatttggggctcaaagtgatggtcacaacaggaggaacaaatctaaag
gacgatataatgcgactctatgaaccagtgcatgtgattattgcaactcccggtagaata
ttggacctgatgaacaagaatctagtcaaaattggtaaatgtggaatgctagttctggat
gaggctgataaactgctgtctcaagacttcaaggggatgctggatcacatcattgcccac
ctccccccggaccgccaaatcctcctgtattccgcaaccttccccctgactgttgaacaa
ttcatgagaaaacacttgaataacccatacgagatcaacttgatggacgaattgactctg
aagggggtcacacagtattatgcctttgtgcaggaaaaacaaaaggtccactgtctcaat
actctattttcaaagttgcaaatcaaccagtcgatcatcttctgtaactcgacccagaga
gtggaactgcttgccaagaagataaccgagctcggctactcctgcttctacattcatgcc
aagatgaatcagcagcacagaaacagggttttccatgacttcaggcagggtctctgtagg
aatctggtgtgttcagatctgtttaccagaggaattgatatccaggccgtaaacgttgtc
atcaactttgatttccccaagcatgccgagacatatctccacagaatcggtcgatcagga
agatttggacacctgggagtagccatcaatctcattacttacgatgacaggtttgcctta
cacaaaattgaaagtgaattgggaacagaaataaagcctattccaaagaacatcgacaag
tctctgtatgtagctgagttccacatgatgaatgaccatgaagagggaggggacacgcac
tcacagcgcgggggtggacactag
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