Magallana angulata (Portugese oyster): 128192052
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Entry
128192052 CDS
T09348
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128192052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128192052
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128192052
mRNA cycle factors
Common to processing body (P body) and stress granule
128192052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
128192052
NCBI-ProteinID:
XP_052720422
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All DBs
Position
7:complement(24738670..24752813)
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AA seq
1166 aa
AA seq
DB search
MSSAAQVLRQADALKASITDSSKGVSETWVVRQRLEDLYKKLLLMDLEYALDKKVEQDLW
NHAFKNHINILQTQTKDRQNAKRGETHATLNLFLETASGFYLQLIQLICTTFKLDLPFRR
KSSCFGIMKEKTTLRVKIVPPKKSSCLYVCQYCLVHLGDIARYRQQIEQAQTFYWHAANL
VPFNGQPYNQLAIVEAARGNKLTTVFYYVRSLAVRHPFPAAATNLEKLYTKLTKDIPELK
GKLSVSEMITSFLQLHACIHLCTELDRAAALSSKLLAALPAHVTSQSFPSHILVQIVAIN
IFSMHHAQRMTQYQDGEERADSFSEELGSEELRSFSLMFSFTIGILDLLLQNTPKQEQKL
KEFFTLPAVKLLLDWFKLNPVHLQNPILKSSSVMTNLCKVLNNIKLSDNEGGPNISKYED
LPLPEDTELRCFQYLEKAHSMYSYSRLPTEGLPSEVESMLRCMRIYSHGTWLAEETESIS
AQQGKSGRLQFTAPTIQKPITSVYEAGDSQVPFVEKKSVRQNIAIQAIIQKKGQQQAADK
TPKVVPTKIQERVKPPPSVSAEPVKTIVTSTASGPNSPKYLLGVPTTEPQFMKGGSTNVV
GNSRSGTQSSRVPIAQQPPRLQKQLLAQQQQQQGSSQPTLWSENATPQILSKPSASQQKL
LWPYSLQQQSEQNVSKSDSNSSVHSAQSDTSPGKVGAQQPSQQTSEVQRLQLEKQSPSNF
MNMPTVTSDYRMTSRFPVTTNQPSMAPQNMPVNAKNPGSSQNTALQGTAGSNAMFRFPPP
PLPPNSKQFPSMTFDVPPPPLPQPMNMSGAETESRTGFTHQMSSRHQPEKNQQNVMAENA
FQQNQSLVNPQRAPQGTNYPSNSNQQHTQSSPLTGNIGNQMQGGVRNLFQNLPPQGFQQM
APGNERPHFGGPANERSPFGGLKPQTVPSQLQNTASQYQLLNQLLSMNAGMGRMNLRAPM
DQPGKKDDFPFVPPELLGALSQLAVQPPNISKEGLMMQNRMGAAFQGHAEGTPKPDTGNS
PNRSPMPGPPDLDSRPTRPGPQTTQQGTYSLFSSSPWSVPLSTADNKSHGPSPFSEEPNM
VRHSPKAEVTEPKMPQGIDMGLRFGHNEEVWLEKSQKGAPPADHNPASGPGPYFPGPLQS
IWSSPGPSPLEKLLEMQKQQRTTDPH
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagcagctcaagtattgagacaagcagatgcattaaaagctagcataacagat
tcctcaaaaggcgtttcagaaacatgggttgtgagacaaagattggaggatctgtacaaa
aaactgctccttatggacctggagtatgccttggataagaaagtggaacaggatttatgg
aaccatgcatttaaaaaccacatcaatatcttgcagacccagaccaaggacagacagaat
gcaaaaaggggtgaaacacatgccacactgaacctctttctggagacagctagtggattt
tacttgcagttgatacaattaatttgtactacattcaaactggatttgccatttagaagg
aagtcatcatgttttgggataatgaaagaaaaaacaacactgagagtgaagattgtgcca
cctaagaaaagctcctgtctgtatgtctgtcagtactgcttggttcaccttggagatatc
gctcgatacagacaacagatagaacaagctcagacattttattggcatgctgccaacctt
gtgccatttaatggtcaaccctacaatcagctagccattgtggaggctgcgcgagggaac
aagctgaccacagtgttttactatgtgagaagtctggctgtcagacatcctttcccagct
gcagccaccaacctggaaaaactgtacactaaactcaccaaggacattccagaattgaaa
ggaaaactctctgtgagtgaaatgatcacatcatttctacaactccatgcctgtatccat
ctgtgcacagaactagatagagcagctgccctgagctccaaacttctggctgccttacca
gctcatgtaacatcccagagtttcccgtcccacattcttgttcagattgtggccatcaac
atcttctcgatgcaccatgcccagcgtatgacccagtatcaggatggtgaggaacgcgca
gactccttcagtgaggaattgggcagtgaggagcttcggtcattctctctgatgttcagt
tttaccattggcattttggacttgcttttgcaaaataccccaaaacaggaacagaaactc
aaagaattcttcactctaccagccgtgaagcttttgcttgattggttcaagttaaaccct
gtacacctgcaaaatcctatcctaaaatcatctagtgtaatgacaaatttgtgtaaagtt
ctgaacaacatcaaactgtctgataatgaaggcggtccaaatatttctaaatatgaagat
ctacctttaccagaagatacagaactaaggtgttttcagtacctggagaaagcacacagc
atgtacagctacagtcgcttgcccactgagggcctaccctcagaagtggagtccatgttg
aggtgcatgaggatctactctcatggaacctggttagccgaggagacagagagtataagc
gctcagcaaggaaagtctgggagactacagtttactgctccaactattcaaaaaccaatc
acttcagtgtatgaagctggagatagtcaagtgccatttgtagaaaagaaatctgtgcgt
caaaatattgccattcaggcaattattcaaaagaaaggtcaacagcaagctgcagataaa
actcctaaagttgttccaactaaaatacaagaaagagttaaaccaccaccatctgtaagt
gcagaaccagtgaaaacaattgtcacatcgacagcctctggtccgaactccccaaaatat
cttctaggtgtaccgaccactgagcctcagttcatgaaaggaggaagcaccaatgtagta
ggtaactcaaggtcaggaactcagagctcaagagttccaatcgcacaacaaccaccgaga
ctgcagaaacagttgctggcacagcaacagcaacaacagggctcttctcaaccaaccctg
tggtcagagaacgcaacaccacagattctcagcaagccatcagcttcacagcaaaagtta
ctgtggccatattcacttcaacagcagtcagagcaaaacgtttcaaaatcggacagcaat
tcttcagtacattcagcacagagtgacaccagtcctggtaaagtgggagcacagcagccc
tctcagcagacgtcagaagttcaaaggttacagctggaaaaacaatcgccaagcaatttt
atgaacatgcctactgttacatctgattacaggatgacatcaagatttccagttacaact
aatcaaccatcaatggcacctcagaacatgccagtcaatgctaagaaccctggatcaagt
caaaacacagcattacaggggactgctggaagcaatgcaatgtttaggtttcctccacca
cctctgccaccaaacagcaaacagtttccttctatgacttttgatgttcctccaccccct
ttaccacaacctatgaacatgtcaggtgcagaaacagagtcaagaactggttttacccat
caaatgtccagccgacatcagcctgaaaagaatcaacagaatgttatggcagaaaatgct
ttccaacagaatcaatcacttgttaaccctcaaagggctcctcaagggacaaattatcca
agcaactcgaatcagcaacacacacaaagcagcccacttacgggaaatattggtaatcaa
atgcagggaggagttagaaatttatttcaaaatctcccaccacaaggctttcagcaaatg
gctcctgggaatgagagacctcactttggaggtcctgccaatgagaggtcaccttttgga
ggactgaaaccacaaacagtgccatcacagttacagaatactgcctctcagtaccaactg
ttgaaccagctactaagcatgaatgctggcatgggaagaatgaacttgagagccccaatg
gatcaaccaggaaaaaaggatgatttcccctttgttcccccagagttgttgggagcactt
tcacagcttgctgttcagccaccaaatattagcaaagaaggcttgatgatgcaaaacagg
atgggtgctgcttttcaaggtcatgctgagggaacaccaaagcctgacacagggaactct
ccaaacagaagcccaatgcctggccctcctgacctagattctcgtcccaccagaccgggg
ccacagaccacacaacaaggaacgtactcactgttcagcagctctccatggtctgtgcct
ctgtccactgcagacaacaaaagccatggaccatccccattctctgaagagccaaacatg
gtaagacattcaccaaaagcagaagttactgagcccaagatgccacaaggaatagatatg
gggctgaggtttggtcataatgaggaagtttggcttgaaaaatcacagaagggtgcacca
ccagcagaccacaaccctgcatcaggaccagggccttatttcccaggaccattacagtca
atctggtcatctcctggtccatctccattggaaaagctcttggaaatgcagaaacaacag
agaaccacagatccccactga
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