Magallana angulata (Portugese oyster): 128193085
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Entry
128193085 CDS
T09348
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128193085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
canu03041
]
128193085
Spliceosome [BR:
canu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
128193085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_Vps41
Ge1_WD40
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_NWD2_C
WD40_like
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_WDR11_1st
R2K_3
Motif
Other DBs
NCBI-GeneID:
128193085
NCBI-ProteinID:
XP_052722285
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Position
7:44980620..44982564
Genome browser
AA seq
521 aa
AA seq
DB search
MDFSDDDEELNVPQVKRAIVYGSLEEKEKLRLAANSSSGSLASDAIKAGKAAGNINITEG
GSYDIAERDPNEGQEELIATLEKRKKARQIQVSTDDFEVKANLRQLGEPICLFGEGPAER
RERLRRTLAELGSEATGAILRKGEQSSEKKTKEEENVTWYHEGTSALKEARIWIAKYSIP
RAKERIKQQKEEKLLPTAKKNAQLQDLHKRVRAVTNECSQIGDVRPLSYCEFSPNGKILA
VASWSGLCKLWSVPDCQLIRQLRGHNCNVGAIVFHPKATLTMEDNACCMASCSQDGAVKL
WNLVSDEPVADIEGHSPYRVSHLKYHPSGRFLGTCCFDNSWRLWDLEVQEEILHQEGHSK
PVYDIAFQGDGALAATGGLDAFGRVWDLRTGRCIMFLEGHIQSVFSIDFAADGYHVATGS
EDNSVKIWDLRQRKCMYTIPAHKNLVSKVKFQPNHGNYLVSASYDCTAKIWAHPTWAPLK
TLAGHEGKVMGTDISPDLKYIATVSYDRTFKLWTTEMQGGI
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcagacgatgacgaagaacttaatgttccccaggtgaagagggcgattgtt
tatgggagcttagaggagaaggaaaagcttagacttgcagctaatagttcatctggctcc
ttagcttcagatgctataaaagccggcaaagctgcaggtaatatcaacatcacagaagga
ggttcttacgatattgcagagagggacccaaacgaaggacaagaggaattgatagctaca
cttgagaaaaggaagaaagcaagacagatccaggtgtcgacagacgactttgaagttaag
gctaatctcagacaactaggagagccgatatgtttgtttggagaaggtccagctgagaga
agagagcgtctcagaagaaccttagctgaattaggatccgaagccacaggggcgatatta
aggaagggagaacagtcatctgaaaagaaaacaaaagaagaagagaatgtgacgtggtat
catgaaggtacttctgcacttaaagaggcaaggatatggattgcaaaatattctattcca
cgggcaaaagaaagaataaaacaacaaaaagaagagaaactcttaccaacagccaagaaa
aatgctcagcttcaagacctccacaagagagttcgagcggtcaccaatgaatgcagtcag
attggagatgtcagacctctttcatattgtgaatttagtccaaatggtaaaatccttgct
gtagcttcatggtctggtttgtgtaagctatggtcagttcctgattgtcagcttatcaga
cagctaaggggacataactgcaatgtaggcgccattgtattccatccgaaagctacattg
acaatggaggataatgcatgctgcatggcctcctgtagtcaagacggagcagttaaactt
tggaacctcgtcagcgatgagccggtggcagacattgagggccacagtccatacagagtg
tcccacttgaagtatcacccctcgggtcgattccttgggacctgctgttttgacaactct
tggagactgtgggatttagaagtccaagaagaaattcttcatcaggaagggcacagtaag
ccagtttatgacattgccttccaaggtgatggtgccttagcagcaacaggaggtctagat
gcatttggaagagtgtgggatcttaggacggggagatgcatcatgtttctggaggggcat
attcaatctgtattttccattgactttgcagctgacggatatcatgttgcaacagggagt
gaggataactcggtgaaaatctgggacttaaggcaaaggaagtgcatgtacactattcct
gctcataaaaatttagtgagcaaagtgaaattccaaccaaatcatggtaactatttagtg
agtgcatcctatgattgtacagcaaagatctgggctcatccaacatgggctccattgaaa
acgctggctggacatgaggggaaagtaatgggaacagacatttctcctgacctgaagtac
atcgctacagtgtcatatgacagaacttttaagttgtggaccacagaaatgcagggtgga
atttaa
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integrated database retrieval system
