Cellulophaga algicola: Celal_0207
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Entry
Celal_0207 CDS
T01404
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cao
Cellulophaga algicola
Pathway
cao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Celal_0207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cao03019
]
Celal_0207
Enzymes [BR:
cao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Celal_0207
Messenger RNA biogenesis [BR:
cao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Celal_0207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
HEM4
ERCC3_RAD25_C
Utp25_C
Helicase_RecD
SUa-2TM
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADV47557
UniProt:
E6X7W4
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All DBs
Position
217689..218978
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AA seq
429 aa
AA seq
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MTFKELGIAEPILKALTSEGYENPTPIQEKSIPILLKGKDLLGVAQTGTGKTAAFGIPIL
HHIYTNNSGIGKRKIKALVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTDA
LRQGVEILIATPGRLLDLMNQGFISLRDLEYVVLDEADQMLDMGFIHDVKKIIAKLPAKR
QSLFFSATMPKTIVELSQKILGEFEQVTIKPEQATAEKVEQAIYFVPKGDKVKLLVHLIE
TKEAKAVLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTVLVA
TDIAARGIDIDDLSLVVNYDLPNVPETYVHRIGRTGRANASGVALSFCDREERAYLKDIQ
KLIKQTIPTVTDHPFKDDGSRPVEVDTDDRPKRPGQQNRSRNSGQKPNNSNNRNKNRNRN
KNRSSDGPK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaattagggattgcagagcctattttaaaagctttgacttcagaaggt
tacgaaaatcctactccaatacaagaaaaatctattccgatattactaaaaggcaaagat
cttttaggcgttgcacaaacaggaactggaaaaacagcagctttcggaatacccatttta
catcacatatatacaaacaatagtggcataggtaaacgaaaaattaaagctttagtagtt
acccctactcgagaactagccattcaaattggcgaaagttttactgcatacgcaaggttt
acagggattaaaaataccgttatttttggcggtgttaaacaaggtaagcagactgatgca
ttacgccaaggtgttgaaattttaattgctactcctggtcgtttgttagatttaatgaat
caagggtttatctctttacgcgatttagaatatgtggttttagatgaagccgatcaaatg
cttgatatgggttttatacacgatgtaaaaaaaatcatcgcaaaattacctgctaaacgt
caatcgcttttcttttcggcaaccatgcctaaaacaattgtagaattatcacaaaagata
ttaggcgaatttgagcaagtaacgattaagcctgaacaagctaccgctgaaaaagtagag
caagctatttattttgttcctaaaggagataaggtgaaacttttggttcacttaattgaa
actaaagaagctaaagcagttttagttttctcgaggactaaacatggcgccaacaaaata
gttaagttattagacaaagcagggataaatgctgctgctattcatggaaataaatcgcaa
acggcaagacaaaatgccttgaacgattttaaagacggaaaattaactgttttagtggct
actgatattgctgcacgtggaattgatattgacgatttatcattagtcgttaattacgat
ttaccaaacgtaccagaaacctatgttcaccgtattggtagaaccggaagagctaatgcc
agtggtgtagccttatctttctgcgatagagaagaaagagcctatttaaaagacattcag
aaactcataaagcaaacgattcctacagttacagatcatccgtttaaggatgatggcagt
agacccgttgaagtagatacggatgatagacctaagcgaccaggacaacagaatcgttct
agaaacagcggtcaaaaaccgaataattctaacaacagaaataaaaacaggaaccgcaac
aaaaatcgcagtagcgacggacctaaataa
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