Cellulophaga algicola: Celal_0490
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Entry
Celal_0490 CDS
T01404
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cao
Cellulophaga algicola
Pathway
cao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Celal_0490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cao03021
]
Celal_0490
03019 Messenger RNA biogenesis [BR:
cao03019
]
Celal_0490
Transcription machinery [BR:
cao03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Celal_0490
Messenger RNA biogenesis [BR:
cao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Celal_0490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADV47829
UniProt:
E6XAY8
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All DBs
Position
578829..580574
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AA seq
581 aa
AA seq
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MFEISDLKSKKLPELQEIANGLKVPKYKTLKKLDLVYQILDVQAANPKVVQATLSTTTPE
VAEKPKPAKVARPKKPRITAKTEKTEEPTVEKAVESIPKKPNPRPNKPNPRPVVAKEVPN
KSIEERPTKEAPKEARAPHPKNTKAPAPNQKKEFQKKTPVHTNQNNNNPNQNNPNQNNPN
QNKPNPRPKQEKNNNFDKDLKNRYKEPEYEFDSIIASEGVLDIMQDGYGFLRSSDYNYLS
SPDDIYVSQSQIRLFGLKTGDTVLGNVRPPKEGEKYFPLIKVNKINGIDPQVVRDRVAFE
HLTPLFPQEKFNLSERQGTISTRIIDLFSPIGKGQRGMIVSQPKSGKTMLLKDIANGIAA
NHPEVYQIILLIDERPEEVTDMQRNVRGEVVASTFDKEPTEHVRVANIVLEKAKRLVECG
HDVVILLDSITRLARAYNTVQPPSGKVLSGGVDANALHKPKRFFGAARNIEGGGSLSIIA
TALTETGSKMDEVIFEEFKGTGNMELQLDRKIANRRIFPAIDLTSSSTRRDDLLLDETTI
QRMWILRKYLADMNPIEAMEFIEQRIKQTKNNEEFLMTMSQ
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagatttaaaatcaaaaaagcttcctgagcttcaggaaatagccaat
ggtttaaaagtaccaaagtacaaaaccttaaaaaaactagacttagtttatcaaatttta
gatgtgcaagctgccaatcctaaagttgtacaagctacactaagtactactactcccgaa
gtagcagaaaaacctaaacctgctaaagttgcacggcctaaaaaaccgagaataacggct
aaaacagagaaaacagaagaacctactgttgaaaaagcggtagaaagcattcctaaaaag
ccaaatccgaggcccaataagccaaacccgaggccagtagttgcaaaggaagttcctaac
aaatctattgaggaaagacctaccaaagaggctcctaaagaagctagagctccgcaccca
aaaaatacaaaggctccagctccaaatcagaaaaaggagtttcaaaaaaagacacctgtt
cataccaatcagaacaacaacaatccaaatcagaataaccccaatcaaaataatccgaat
caaaacaaacctaatcctcgtccaaaacaggagaagaataacaattttgataaagattta
aaaaataggtataaagagccagaatacgaatttgatagcattattgctagtgaaggagtt
ttagacattatgcaagatggctacggtttcttgcgctcgtctgattacaactatttatca
tcacctgatgatatttatgtttctcaatctcaaatacgtttatttggattaaaaactggg
gataccgttttaggaaatgttcgtccaccaaaagagggagaaaaatattttcctttaatt
aaagtgaacaaaattaatgggatagacccacaagtagtacgtgatcgtgttgcttttgag
cacttaactccattattcccgcaagaaaaatttaacttatcagaaagacaaggtacaatc
tccacacggattatcgacttattctctcctatcggaaaaggacaaagaggtatgattgta
tcgcaacctaaatctggtaaaactatgttgcttaaagatatcgcaaacggtattgcagca
aaccacccagaagtttatcaaattatattactaattgacgaacgccctgaagaagttaca
gacatgcaacgtaatgtacgtggcgaagttgtagcatctacttttgacaaagaacctaca
gaacacgttagagttgctaatattgttttagagaaagcaaaaagacttgtagaatgtggt
catgacgtggttatcttattagattctataacacgtttagcacgtgcatacaacaccgta
cagccgccatccggaaaagtattaagtggtggtgtagatgcaaacgcattacacaaacca
aaacgtttctttggtgctgcacgtaacatagaaggcggaggatcattatctattattgca
accgccttaacagaaacaggttctaaaatggatgaagtcatctttgaagaatttaaaggt
accggtaacatggaactacaattagatcgtaagattgctaatcgcagaatattccctgct
attgaccttacctcttctagcacacgtagagatgatttattactagatgaaactaccata
cagcgtatgtggattctgcgtaaataccttgcagacatgaaccctattgaagctatggag
tttattgaacaacgtattaaacaaacaaaaaataatgaagaatttttaatgacaatgagt
cagtaa
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