KEGG   Cellulophaga algicola: Celal_1472
Entry
Celal_1472        CDS       T01404                                 
Name
(GenBank) RNAse R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
cao  Cellulophaga algicola
Pathway
cao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Celal_1472
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cao03019]
    Celal_1472
   03016 Transfer RNA biogenesis [BR:cao03016]
    Celal_1472
Enzymes [BR:cao01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Celal_1472
Messenger RNA biogenesis [BR:cao03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Celal_1472
Transfer RNA biogenesis [BR:cao03016]
 Prokaryotic type
  tRNA degradation factors
   Celal_1472
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 S1
Other DBs
NCBI-ProteinID: ADV48784
UniProt: E6XA85
LinkDB
Position
1688377..1690566
AA seq 729 aa
MSKKKKSSSGQKKNEITRGIFTVLEKEPNKSFNYKEIAAKIQISEANDRNDLIKRLVQLK
EKRRIVETSPGKYKAIENTKTYHTGTVDITGRGNAYIIIEGMDDDVFVPVNKINKAFHKD
TVEIYIYPRRKGKKLEGEVTKIVKRFKTSFVGILDMQKSFAFVRVGDFRMYTDFFIPKDK
INNAEDGDKVIVEYNEWPDKTDSPYGTITQVLGKPGEHNTEIHSILAEYGLPYEFPVEVE
QFANDLDTSIKPEEIAKRRDMRDTLTFTIDPRDAKDFDDALSFEVLDNGNFEIGIHIADV
SHYLTPDTVMDDEAYERATSVYLVDRVVPMLPEVLSNNACSLRPHEEKYTFSAIFEIDKK
AHVIKEWFGRTVINSNERFSYEEAQHIIENKVNSIPEDISIRAAAYEVSEEVVNATLKLD
ELAKIMRSRRMNAGAISFDKVEVRFNLTPEGEPESVYFKEAKDANKLIEEFMLLANRKVA
EFIGKQKPEKTFVYRVHDEPNEEKLMALNGIISRFGHKLDFKSKKTISSSLNQLLEDVKG
KGEQNMVDTLAIRTMSKAIYTTDNIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDN
GATAKKEVYEEKCKHSSDMEGLASSAERDSIKYMQIKFMEDHQDREFVGVISGVTEWGIY
VEIVENKCEGMVRISDIKGDYYNFDEKQYAIIGERTKKVYQLGDEVIVMVKNTDLVKRHL
DFTLIGKAE
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgtcgaagaaaaagaaaagctcttcaggtcagaaaaagaatgaaattacaagaggtatt
ttcactgtcctagaaaaagaaccaaataaaagttttaattacaaagagattgctgctaaa
atacaaattagtgaggctaacgatcgtaatgacttaataaagagattagtacaattaaaa
gagaagcgtagaattgtagaaacttccccagggaaatacaaggctatagagaataccaaa
acctatcataccggtactgtagatattacaggaagaggtaatgcttacatcattattgaa
ggtatggacgatgatgttttcgttcctgtgaacaaaataaacaaggcttttcataaggat
acggtagaaatttacatctatccacgtagaaaagggaagaaattagagggtgaagttact
aaaattgtaaaacgttttaagaccagttttgtagggattcttgatatgcaaaagtctttt
gcttttgtacgtgtaggcgattttagaatgtataccgacttctttattcctaaagataaa
attaacaatgcggaagatggcgataaggttattgtagaatataacgaatggccagataaa
accgattctccttatggtactattacacaagttttaggaaaaccaggagaacacaatacg
gaaatacattctatcttagcagaatatggtttgccttatgaatttccagtagaagtagaa
caatttgcaaatgatttagatacttctattaaaccagaagaaattgcaaaacgtagagat
atgcgtgatacgctgacctttacaattgatccacgtgatgctaaagattttgatgatgcc
ttatcttttgaagttttagataatgggaattttgaaataggaattcacattgcagatgtt
tcgcattatttaacgccagatacggtgatggatgatgaagcatatgaaagagcaacatct
gtttatttagtagacagggtggtacctatgttaccagaagtactttctaacaatgcgtgt
tctttacgtccgcatgaagaaaaatatactttttctgctatttttgaaattgataaaaaa
gcacatgtcattaaggaatggtttggccgtacggttataaattctaatgaacgtttttct
tatgaagaagcacaacatattattgaaaataaagtaaatagcattcctgaagatatttct
attagagctgctgcttatgaagtttctgaagaagttgttaatgccactttaaaattagac
gaactcgcaaaaattatgcgttcgcgtagaatgaatgcaggagctatatcttttgataaa
gtagaagtacgttttaatttaacaccagaaggagaaccagaaagtgtttattttaaagaa
gctaaagatgctaataaacttattgaagagtttatgcttttagcaaatagaaaagtagcc
gaatttattgggaagcaaaaaccagagaaaacttttgtgtatcgagtgcatgatgagcca
aatgaagagaaactaatggctttaaatgggattatctctcgttttggtcataagctagac
ttcaagagtaaaaagaccataagtagctctttaaatcagcttttagaagatgtaaaaggt
aaaggcgagcaaaatatggtagatacccttgctatacgtaccatgagtaaagctatttat
actaccgataatattggtcactatggtttagcttttgattactatacccattttacttca
ccaattcgtaggtatcctgatgtaatggtacatcgtttattgcaacattatttagataat
ggtgctaccgctaaaaaagaggtttatgaagaaaaatgtaaacattcttcagatatggaa
ggtttagcttctagtgcagaacgtgattctattaaatacatgcaaattaaattcatggaa
gatcatcaagatcgtgaatttgtgggtgtaatttctggagtaaccgaatggggaatctat
gtagaaattgtagaaaacaaatgcgagggaatggttcgtattagtgacataaaaggtgat
tactataattttgatgaaaaacaatatgctatcattggggaacgtactaagaaagtatac
caacttggtgatgaagtaatcgtaatggtaaaaaatacagatcttgtaaaaagacattta
gattttacattgattggtaaggcagaatag

DBGET integrated database retrieval system