Cellulophaga algicola: Celal_1472
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Entry
Celal_1472 CDS
T01404
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cao
Cellulophaga algicola
Pathway
cao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Celal_1472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cao03019
]
Celal_1472
03016 Transfer RNA biogenesis [BR:
cao03016
]
Celal_1472
Enzymes [BR:
cao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Celal_1472
Messenger RNA biogenesis [BR:
cao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Celal_1472
Transfer RNA biogenesis [BR:
cao03016
]
Prokaryotic type
tRNA degradation factors
Celal_1472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
Motif
Other DBs
NCBI-ProteinID:
ADV48784
UniProt:
E6XA85
LinkDB
All DBs
Position
1688377..1690566
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AA seq
729 aa
AA seq
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MSKKKKSSSGQKKNEITRGIFTVLEKEPNKSFNYKEIAAKIQISEANDRNDLIKRLVQLK
EKRRIVETSPGKYKAIENTKTYHTGTVDITGRGNAYIIIEGMDDDVFVPVNKINKAFHKD
TVEIYIYPRRKGKKLEGEVTKIVKRFKTSFVGILDMQKSFAFVRVGDFRMYTDFFIPKDK
INNAEDGDKVIVEYNEWPDKTDSPYGTITQVLGKPGEHNTEIHSILAEYGLPYEFPVEVE
QFANDLDTSIKPEEIAKRRDMRDTLTFTIDPRDAKDFDDALSFEVLDNGNFEIGIHIADV
SHYLTPDTVMDDEAYERATSVYLVDRVVPMLPEVLSNNACSLRPHEEKYTFSAIFEIDKK
AHVIKEWFGRTVINSNERFSYEEAQHIIENKVNSIPEDISIRAAAYEVSEEVVNATLKLD
ELAKIMRSRRMNAGAISFDKVEVRFNLTPEGEPESVYFKEAKDANKLIEEFMLLANRKVA
EFIGKQKPEKTFVYRVHDEPNEEKLMALNGIISRFGHKLDFKSKKTISSSLNQLLEDVKG
KGEQNMVDTLAIRTMSKAIYTTDNIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDN
GATAKKEVYEEKCKHSSDMEGLASSAERDSIKYMQIKFMEDHQDREFVGVISGVTEWGIY
VEIVENKCEGMVRISDIKGDYYNFDEKQYAIIGERTKKVYQLGDEVIVMVKNTDLVKRHL
DFTLIGKAE
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaaaaagaaaagctcttcaggtcagaaaaagaatgaaattacaagaggtatt
ttcactgtcctagaaaaagaaccaaataaaagttttaattacaaagagattgctgctaaa
atacaaattagtgaggctaacgatcgtaatgacttaataaagagattagtacaattaaaa
gagaagcgtagaattgtagaaacttccccagggaaatacaaggctatagagaataccaaa
acctatcataccggtactgtagatattacaggaagaggtaatgcttacatcattattgaa
ggtatggacgatgatgttttcgttcctgtgaacaaaataaacaaggcttttcataaggat
acggtagaaatttacatctatccacgtagaaaagggaagaaattagagggtgaagttact
aaaattgtaaaacgttttaagaccagttttgtagggattcttgatatgcaaaagtctttt
gcttttgtacgtgtaggcgattttagaatgtataccgacttctttattcctaaagataaa
attaacaatgcggaagatggcgataaggttattgtagaatataacgaatggccagataaa
accgattctccttatggtactattacacaagttttaggaaaaccaggagaacacaatacg
gaaatacattctatcttagcagaatatggtttgccttatgaatttccagtagaagtagaa
caatttgcaaatgatttagatacttctattaaaccagaagaaattgcaaaacgtagagat
atgcgtgatacgctgacctttacaattgatccacgtgatgctaaagattttgatgatgcc
ttatcttttgaagttttagataatgggaattttgaaataggaattcacattgcagatgtt
tcgcattatttaacgccagatacggtgatggatgatgaagcatatgaaagagcaacatct
gtttatttagtagacagggtggtacctatgttaccagaagtactttctaacaatgcgtgt
tctttacgtccgcatgaagaaaaatatactttttctgctatttttgaaattgataaaaaa
gcacatgtcattaaggaatggtttggccgtacggttataaattctaatgaacgtttttct
tatgaagaagcacaacatattattgaaaataaagtaaatagcattcctgaagatatttct
attagagctgctgcttatgaagtttctgaagaagttgttaatgccactttaaaattagac
gaactcgcaaaaattatgcgttcgcgtagaatgaatgcaggagctatatcttttgataaa
gtagaagtacgttttaatttaacaccagaaggagaaccagaaagtgtttattttaaagaa
gctaaagatgctaataaacttattgaagagtttatgcttttagcaaatagaaaagtagcc
gaatttattgggaagcaaaaaccagagaaaacttttgtgtatcgagtgcatgatgagcca
aatgaagagaaactaatggctttaaatgggattatctctcgttttggtcataagctagac
ttcaagagtaaaaagaccataagtagctctttaaatcagcttttagaagatgtaaaaggt
aaaggcgagcaaaatatggtagatacccttgctatacgtaccatgagtaaagctatttat
actaccgataatattggtcactatggtttagcttttgattactatacccattttacttca
ccaattcgtaggtatcctgatgtaatggtacatcgtttattgcaacattatttagataat
ggtgctaccgctaaaaaagaggtttatgaagaaaaatgtaaacattcttcagatatggaa
ggtttagcttctagtgcagaacgtgattctattaaatacatgcaaattaaattcatggaa
gatcatcaagatcgtgaatttgtgggtgtaatttctggagtaaccgaatggggaatctat
gtagaaattgtagaaaacaaatgcgagggaatggttcgtattagtgacataaaaggtgat
tactataattttgatgaaaaacaatatgctatcattggggaacgtactaagaaagtatac
caacttggtgatgaagtaatcgtaatggtaaaaaatacagatcttgtaaaaagacattta
gattttacattgattggtaaggcagaatag
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