Cellulophaga algicola: Celal_1876
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Entry
Celal_1876 CDS
T01404
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cao
Cellulophaga algicola
Pathway
cao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Celal_1876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cao03400
]
Celal_1876
Enzymes [BR:
cao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Celal_1876
DNA repair and recombination proteins [BR:
cao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Celal_1876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Elong_Iki1
AAA_31
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADV49176
UniProt:
E6XE95
LinkDB
All DBs
Position
complement(2139609..2142986)
Genome browser
AA seq
1125 aa
AA seq
DB search
MSQKIIQQLYEQSPQLQKLHTAISNFEKEKGIINIKGLIGSSLSFVLTDAFKNANTPFLL
IFNDKEEAAYHLNDLEQMIGEKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKK
PAVIVTYPDALFEKVVTRKELDKNTLKIKIEDSLSLDFLNEVLFEYKFKRVDFVTEPGEF
SVRGGIVDVFSFSNDEPYRLEFFGDEVESIRTFDVETQLSLEKLNKITIIPNVENKFLDE
SRESFLQYIASNTLIFNSDLEVLLDRLDSFFEKAKEAFSKLSSDIKHAEPKALFVDSELF
KKELDAFSLIVGGNPNLKEIAHEIQFNTRPQPSFNKKFDLLIDSLNEQEKAGFTNYIFCS
SEQQAQRFHDIFDEVGKKVHYKTVVFPLFQGFIDIDLKITCFTDHQIFERYHKFHLKNGY
SKKQAITLKELTRLDIGDYVTHMDHGVGKFGGLQKIDVEGKKQEAIKLVYGERDILYVSI
HSLHKISKFTGKDGTPPKIYKLGSGAWKKVKEKAKSRVKKIAFDLIQIYAKRRTLKGFQY
APDGYLQHELEASFIYEDTPDQSKATEDIKRDMESERPMDRLICGDVGFGKTEVAIRAAF
KAVANGKQVAVLVPTTILAFQHNRTFKERLKDMPVTVDYLNRFRTTKEKKDTLERLEAGK
VDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTL
QFSLMAARDLSVINTAPPNRYPIQSDVIRFSEETIRDAVSYEIQRGGQVFFIHNRVENIK
EVAGLIQRLVPDAKIGIGHGQMEGKKLEILMLAFINGEFDVLVSTTIIESGLDVSNANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTSDARKRIEALEQFTELGSGF
NIAMKDLEIRGAGDILGGEQSGFINDIGFDAYQKILAEAVEELKENEFKDLYEEIEGHTH
EKVFVKETQIDADFELLFPDDYINNITERLNLYTALNLITDEEGLKKFELDLIDRFGELP
IEAEDLLNSVRIKWIANAIGLEKIVMKQGKMIGYFIADQQSAFYQSANFTKVLQFVQAHP
KLCKIKEKQTRNGLRLLLVFETINSLDKAYLAIQHFEKEKKLATN
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaaaaaatcattcaacaactctacgaacagtctccgcaattgcagaaactgcac
actgccatttccaattttgaaaaagagaaaggtattattaacataaaaggtcttatagga
tcgtctttatcttttgtattgacagatgcttttaagaacgctaatacaccttttctccta
atctttaatgataaagaagaagccgcttatcatttgaatgatttagaacaaatgataggg
gaaaaagacgtgctcttttatcctggaagttaccgtagaccgtatcaaattgaagaaaca
gacaatgctaatgtactattgcgtgcagaagttttaaaccggattaattcgcgtaaaaaa
cctgctgtaattgttacctatcctgatgctctttttgagaaagtagtgacccgaaaagaa
ctggataaaaacacattaaaaataaagattgaagattctttatcgctagattttttaaac
gaagtactctttgaatacaaatttaaacgggtagattttgttacagaacctggagagttt
tctgttcgcggtggtattgtagatgttttctctttctcaaatgatgagccctaccgttta
gaattttttggtgatgaggtagaaagtatcagaacttttgatgtagaaacccaactatcc
cttgagaaattaaataagattacgattatccctaacgtagaaaacaaatttttagatgag
tctagagagagttttcttcaatacattgcatcaaacaccctaatttttaacagtgatcta
gaagttcttttagatcgtttagattctttttttgagaaggcaaaggaagcttttagcaaa
ctttctagtgatataaagcatgcagaacccaaagcgctatttgtagattctgaattattc
aaaaaagagcttgatgcatttagtctaattgtaggcggaaatcctaacttaaaggaaata
gcgcacgaaattcagtttaatacaagacctcaaccttctttcaataaaaaattcgattta
ttaattgatagcttaaacgaacaagaaaaggctgggttcaccaattatatcttttgttca
tcagaacaacaagcacaacgctttcatgatatttttgatgaagttggaaaaaaagtacat
tacaaaacagtagtatttccactttttcaaggctttatagatatcgatttaaaaataacc
tgttttacagatcatcaaatttttgaacgataccataaattccatttaaaaaacgggtat
tctaagaaacaagccattacgctaaaggaattaacccgtttagatattggcgattatgtg
acccatatggaccacggtgttggaaaatttggtggtttacaaaaaattgatgtggaaggc
aagaagcaagaagctattaaattagtgtatggcgagcgcgatatcctatatgtaagcatc
cattcccttcataaaatttctaaattcactggcaaagatggtacgcctccaaaaatatac
aagcttggctctggtgcttggaaaaaagtaaaagaaaaagcgaaatctagagttaagaaa
attgcctttgatcttattcaaatctatgcaaaaagaagaacgctaaaaggatttcaatat
gctcctgatgggtatttgcaacacgaactagaggcctcttttatctatgaagatacgcca
gaccaaagtaaagctacagaagatattaaacgcgatatggaaagtgagcgaccaatggat
cgtttaatttgtggtgatgtaggttttggaaaaactgaagttgcgatccgtgctgcattt
aaagcggttgctaacggaaaacaagtggctgttttagtacccactacaattttagctttt
cagcataacagaacatttaaagagcgactaaaagatatgccggttacggtagattattta
aatagatttagaactactaaggagaaaaaagacaccttagaacgcttagaagcaggtaaa
gttgatattattattggcacacaccaattagtaaacaaaaatgtaaaatttaaagactta
ggattattaattgttgatgaagaacagaaatttggtgtagccgtaaaagacaaattaaaa
tctattaaagagaatgtagatgtcttgacattaacagcaactcctatcccgagaacatta
caatttagtttgatggctgctcgtgatttatcggtaataaatacagcaccaccaaacagg
tatcctattcagagtgatgtcattcgcttttcagaagaaaccatccgtgatgcggtgagt
tatgaaattcaacgaggcggacaagtattttttatccataatcgtgtagaaaacatcaaa
gaagttgcgggtttaatacaacgcttagtacccgatgctaaaattggaattggacacgga
caaatggaaggcaaaaagctagaaattttaatgctcgcttttatcaatggagagtttgat
gtattggtctctacgaccattattgaaagcggactagatgtttctaatgcaaataccata
ttcatcaataatgccaataattttggtttgagtgatttgcaccagatgcgtggacgtgta
ggacgaagtaacaaaaaggcattttgttattttattacaccgccatatgaagtaatgacc
tctgatgctcgcaaacgaattgaagctttagagcaatttacagaattaggtagtggattt
aatattgccatgaaagatttagaaattcgtggcgctggtgatattcttggtggcgaacaa
agcggatttataaatgatattggttttgatgcctatcaaaaaatcttagcggaagctgtt
gaggagcttaaagaaaatgaatttaaagacctttacgaagaaattgaagggcatacacat
gagaaagtgtttgtaaaagaaacccagattgatgccgattttgagttgcttttccctgat
gattatatcaataatattacagaacgattaaatctgtatactgcactaaatctaattacg
gatgaagaaggtttaaagaaatttgaattagacctaatcgatcgttttggagaactacct
atagaagcagaagatctattaaattctgttcgtataaaatggatcgctaatgctattggt
ttagaaaaaatagtgatgaaacaaggtaaaatgataggatattttatcgctgatcaacaa
tctgctttttaccagagtgctaactttacaaaagtattacagtttgtacaagcgcatcct
aaattgtgtaagattaaagagaaacaaacgagaaacggattgcgattactcttagttttt
gaaactattaattctctagataaagcttatctagccatacaacactttgaaaaagaaaag
aaactagctacaaattaa
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