Cellulophaga algicola: Celal_4104
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Entry
Celal_4104 CDS
T01404
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cao
Cellulophaga algicola
Pathway
cao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Celal_4104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cao03019
]
Celal_4104
Enzymes [BR:
cao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Celal_4104
Messenger RNA biogenesis [BR:
cao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Celal_4104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Helicase_C_2
PHB_acc_N
Motif
Other DBs
NCBI-ProteinID:
ADV51346
UniProt:
E6XEL8
LinkDB
All DBs
Position
complement(4690262..4691611)
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AA seq
449 aa
AA seq
DB search
MSSFEDFNLKKQLNYAIEDLKFSAPTPIQEAAFSVVMSGKDIVGIAQTGTGKTMAYMLPI
LQEITFSKQIHPRVLVLVPTRELVLQVVENIESFAKYINIRVLGVYGGTNINTQKQQCAQ
GTDILVATPGRLYDLALSKAVKLKEVKKLVIDEVDVMLDLGFRFQLINLFDLLPARRQNI
MFSATMTDDVDALIDDFFTAPEKVSIAVSGTPLDNIKQVCYAVPNFYTKINLLIRLLKDK
DTYQKVLVFVSNKRFADKVFEEMEVAFGNESCVIHSNKTQNYRMRSIRQFDEGKNRILVT
TDVMARGLDLDKITHVINFDTPNYPENYMHRIGRSGRAEHQGNSVLFYTEKEEPLKEAIE
ALMDYEIPLMAIPENVELSEELIAEERPRIIEADNPNQNTLDSQGSFHEKKEKNKKENQG
GSYQRIIAQKYKKPQTRGDKNYNKRNKKK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttttgaagatttcaacttaaaaaaacaactaaattacgcgattgaagattta
aaattttcagctccaacacctattcaagaagcggctttttctgtagttatgtcaggaaaa
gacattgttggtattgcacaaacgggtacagggaaaacaatggcatatatgttgccaatt
ctgcaagaaataacattttctaagcaaattcatccaagagttttggttttggttcctact
agagagttagtattgcaagttgtagaaaatatagaaagttttgcaaaatatataaacatt
cgtgttttaggagtttatggaggtaccaatattaatacccaaaagcaacagtgtgctcaa
ggtacagatattttagtagcaacaccaggtagactttatgatttggcgctatcaaaagcg
gtaaaattaaaagaagttaaaaaattggttattgatgaagttgatgtcatgcttgatttg
ggctttcgctttcagctgattaatctttttgatttattgccagcaagaagacagaatatt
atgttttctgcaacgatgactgatgatgtagatgcacttattgatgatttttttacagct
ccagaaaaagtttctatagcagtaagtggtactcctttagataatattaagcaagtttgt
tatgctgtgcctaatttttatactaaaattaatttacttattcgcttattaaaagataag
gatacctatcagaaagttttggtatttgtgagtaataaacgctttgcggataaggttttt
gaagagatggaagttgcttttggtaacgaatcttgtgtaattcattctaacaaaacgcag
aattacagaatgcgttctattcgtcaatttgatgaaggtaaaaaccgtattcttgtaact
acagatgtaatggctcgtggtttagatttagataaaataacccatgtaattaattttgat
acgccaaattacccagaaaactacatgcatagaattggtagatcgggtagggcagaacac
caaggaaattccgtcttattttacacagagaaggaagagcctttaaaggaagctattgaa
gcccttatggattatgaaattccattaatggcaattcctgagaatgtagaactgtcagaa
gaacttattgcggaagaacgcccaagaattattgaagcagataatcctaatcaaaatacc
ttagattctcagggaagttttcacgaaaagaaagaaaaaaataaaaaagaaaatcaaggt
ggttcataccaacgtattatagctcaaaaatataagaagcctcaaactaggggtgataag
aattataataaaagaaataagaagaagtaa
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