Caldilinea aerophila: CLDAP_36060
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Entry
CLDAP_36060 CDS
T01797
Symbol
colA
Name
(GenBank) microbial collagenase
Organism
cap
Caldilinea aerophila
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_4
PKD
GEVED
Y_Y_Y
Ig_3
K319L-like_PKD
DUF7382
Big_9
Sde0182_C
Glyco_hydro_92N
Motif
Other DBs
NCBI-ProteinID:
BAM01646
UniProt:
I0I8Q8
LinkDB
All DBs
Position
complement(4505063..4510000)
Genome browser
AA seq
1645 aa
AA seq
DB search
MYWAISSGVGLLLLSIMVAALLWPYGAAFAQSGPNGVATHDLATHFNGACATLTNTIVST
ANGGEIRLRATVEDYFDGDTIDTTQWITDYSNPAYPDQAPLIGSGVLTLYGSYLRSVQVF
SETTPTRFFEASARMADASLMRSPSNVDIGFYRAYPPLRLPPGEQSSIRLFIGQPAHSTV
NRLLYVRSRDGADGPILDTMVNNWGGVESDQRIGLSQYRTFRINWGPTETWYLIDGSVIS
QVPGDTPLPHTGVSTRTTYVFLYNQDPLDPDSPNWSNTMPLLVDWVRAGVYPSSGQYTSC
VLDAGQIANWSQATVTATILAQTGASLETRTSVDGATWSSWAPAGTIGNGVSVLTPSSPS
GRYLQYRLTLTSSDPIHSPEVAALSFSYFGPSSLVVAPAAATLNPGASQQFAATAYDSNN
AVVNNAPVSWSIVDGGGVIDNGGLFTAGLPAGVFTDTVVATTSNNVTGTATITVLELPPV
AVIGGPYTGVEGQPVQLDASGSSDPNGGPLSYAWDLNNDGLYDNATGPMPSAAWPDNGVY
TIGLLVTDSAGLTGTASTTVTIANADPQITFIDRNTPVRRGELFTVTVTATDVPSDTLYY
SFDWTSDGTFDVENSLSNTAVTTYPNTGVYTVTVRVADEDGGMITETTTVTVTPQLLSAT
ATNNGPVRRGQNVTVTVNAVQELSDPLTYAFDWDNNGTYDLTTMSSSAVVSYTTTGARTV
GVRVTDADGGVVTTSTVVTVTPQLLSATATNDSPVRRGQNVTVTVNAVQELSDPLTYAFD
WDNNGTYDLTTMSSSAVVSYTTTGARTVGVRVTDADGGEVTTSTVVTVTPQLLSATATNN
GPVRRGQNVTVTVNAVQELSDPLTYAFDWDNNGTYDLTTMSSSAVVSYTTTGARTVGVRV
TDADGGVVTTSTVVTVTPQLLSATATNNGPVRRGQNATVTVNAVQELSDPLTYAFDWDNN
GTYDLTTMSSSAVVSYATTGARTVGVRVTDADGGEVTTSTVVTVTPQLLSATATNDGPVR
RGQNVTVTVNAVQELSDPLTYAFDWDNNGTYDLTTMSSSAVVSYTTTGARTVGVRVTDAD
GGEVTTSTVVTVTPQLLSATATNDGPVRRGQNVTVTVNAVQELSDPLTYAFDWDNNGTYD
LTTMSSSAVVSYTTTGAQTVGVRVTDADGGEVTTSTVVTVTPQLLSATATNNGPVRRGQN
ATVTVNAVQELSDPLTYAFDWDNNGVFEVVQPSNSAAMSFTSTGVKPVGFGVTDGQGAVV
TGTTYVTVTPQMLTINEVTNSGPVVRNQPVTVIVTATQELSDPLLYSFDWDNNGVYDVVD
QVSNSAVTVYPTAGNYVVRVRVRDADGGEATATTTVQVNAQVIQITQVTSDAPKRRGQTV
TVSVTAVQQLNETLLYSFDWNNDEVYEVVDQTGATASTSYASTGTKTVRVRVRDSQNSEA
VTTANLLITPQLLSATATNDGPVRRGQNATVTVNAVQELSDPLTYAFDWDNDGTYDLTTM
SSSAVVSYTTTGARTVGVRVTDADGGEVTTSTVVTVTPQNLTITSVVNSGPVAVGDSVLV
TVNAVQELNDALLYSFDWDNDETYDVIDQPLNSASTSYATPGEKTVRVRVRDGNGAEATA
TTTFEVLEVGGGGFTDFLYLPIVNR
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
gtgtactgggcaatcagcagcggcgtggggttgctgttgctctcgatcatggtggctgcg
ctgttatggccttacggggcggcctttgcgcaaagcggtccaaacggtgttgccacccac
gatttggcgacgcatttcaacggcgcctgcgccactttgacgaacacgatcgtcagcact
gctaatggcggggagattcggctgcgcgctacggtcgaggattatttcgacggcgacacc
atcgatacaacccagtggatcacggactactcgaaccctgcctatccagatcaagcgccc
ttgatcggcagcggtgtgttgacgctttatggcagctacctgcgctcggtgcaggtcttt
tctgaaacgacgcccacgcgctttttcgaggccagcgcccgcatggcagatgccagcttg
atgcgctcgccaagcaatgtagacattggcttttatcgcgcttatccgcctctccggttg
cctcctggcgagcaaagctccatccgcctgttcatcggccagccagcgcactcgaccgtc
aatcgactgctctatgtgcgctctcgcgacggtgcagatggtccgattctggacacgatg
gtcaacaattgggggggagtcgaatcagatcaacgcattggcctttcacaatatcgcacc
ttccgcatcaactggggaccgactgaaacatggtatctgatcgacggcagcgtgatctca
caggttcccggcgacaccccgctgccgcacaccggcgtttcgacgcgtacgacgtatgtg
tttttgtacaatcaggatccactcgaccctgatagtccgaactggtccaataccatgccg
ttgctcgtggactgggtgcgcgccggcgtctatccctccagcggccaatacacctcctgt
gttctggatgccggtcaaattgccaactggtcccaggcgacggtgacggccaccatcctg
gcgcagaccggcgcttcgctcgaaacgcgcacctctgtggatggcgccacctggtcgagt
tgggcacccgccgggacgattgggaacggtgtcagtgttctgacgccttccagccccagc
ggccgctatctgcaatatcgcctgaccctcaccagcagcgatccgattcactcgcccgag
gtggcggcgctgagcttttcgtattttggcccttcatcgcttgtggttgcccctgctgca
gcaacgttgaatcccggcgcgtcacagcaattcgccgccactgcctacgacagcaacaat
gctgtcgtcaacaacgcgccggtaagctggagcatcgtcgacggcggcggcgttatcgac
aacggtggtctcttcacggccggcctgccagcgggcgtcttcaccgacacagtggtggcg
accacttccaacaatgtgacaggaaccgccaccattaccgtgcttgagctgccgcccgtg
gccgtgatcggcggcccctatacaggagtagaagggcaaccggtgcaactggacgccagc
ggcagcagcgatcccaacggcggcccactctcctatgcatgggatctgaacaacgatggc
ctgtacgacaacgccacgggcccaatgccgtctgcggcctggccggacaacggcgtgtat
acgatcggcttgctcgttaccgacagtgccggcctcaccggcacggcgtccacgacggtc
acaatcgctaacgccgatccgcaaattacgttcattgatcgcaacacgcctgtgcgtcgc
ggagagctcttcaccgtgacggtgacggctaccgatgttcccagcgacacgctgtactac
tcgttcgactggacgagcgacggcacgttcgacgtggagaattcgctctcaaacactgcg
gtcacgacctatccgaacacgggcgtgtacacggtgacggtgcgcgtggcggatgaagac
ggtggcatgatcacagaaaccaccactgtgacggtgacgccgcagttgctgagtgcgacg
gcgacgaacaacggccctgtgcggcgagggcagaacgtcacggtgacggtgaatgcggtg
caggagctgagcgacccgctgacgtatgcgttcgactgggacaacaacggcacgtacgac
ctgacgacgatgagctcgagtgcggtggtgagctacacgacgacgggagcccggacggta
ggcgtgcgggtgacggatgcggacggcggcgtggtgacgacgagcacggtggtgacggtt
acgccgcagttgctgagtgcgacggcgacgaacgacagccctgtgcggcgcgggcagaac
gtcacggtgacggtgaatgcggtgcaggagctgagcgacccgttgacgtatgcgttcgac
tgggacaacaacggcacgtacgacctgacgacgatgagctcgagtgcggtggtgagctac
acgacgacgggagcccggacggtgggcgtgcgggtgacggatgcggacggcggcgaggtg
acgacgagcacggtggtgacggtgacgccgcagttgctgagtgcgacggcgacgaacaac
ggccctgtgcggcgagggcagaacgtcacggtgacggtgaatgcggtgcaggagctgagc
gacccgttgacgtatgcgttcgactgggacaacaacggcacgtacgacctgacgacgatg
agctcgagtgcggtggtgagctacacgacgacgggagcccggacggtgggcgtgcgggtg
acggatgcggacggcggcgtggtgacgacgagcacggtggtgacggttacgccgcagttg
ctgagtgcgacggccacgaacaacggccctgtgcggcgcgggcagaacgccacggtgacg
gtgaatgcggtgcaggagctgagcgacccgttgacgtatgcgttcgactgggacaacaac
ggcacgtacgacctgacgacgatgagctcgagtgcggtggtgagctacgcgacgacggga
gcccggacggtgggcgtgcgggtgacggatgcggacggcggcgaggtgacgacgagcacg
gtggtgacggtgacgccgcagttgctgagtgcgacggcgacgaacgacggccctgtgcgg
cgagggcagaacgtcacggtgacggtgaatgcggtgcaggagctgagcgacccgttgacg
tatgcgttcgactgggacaacaacggcacgtacgacctgacgacgatgagctcgagtgcg
gtggtgagctacacgacgacgggagcccggacggtgggcgtgcgggtgacggatgcggac
ggcggcgaggtgacgacaagcacggtggtgacggtgacgccgcagttgctgagtgcgacg
gcgacgaacgacggccctgtgcggcgagggcagaacgtcacggtgacggtgaatgcggtg
caggagctgagcgacccgctgacgtatgcgttcgactgggacaacaacggcacgtacgac
ctgacgacgatgagctcgagtgcggtggtgagctacacgacgacgggagcccagacggtg
ggcgtgcgggtgacggatgcggacggcggcgaggtgacgacgagcacggtggtgacggtg
acgccgcagttgctgagtgcgacggccacgaacaacggccctgtgcggcgagggcagaac
gccacggtgacggtgaatgcggtgcaggagctgagcgacccgttgacgtatgcgttcgac
tgggacaacaacggcgtctttgaggtggtgcagccgtcgaatagcgccgcaatgagcttc
accagcacaggcgtcaaacctgtaggcttcggcgtcacggatggtcagggtgctgttgtc
accggcacaacgtatgttacggtgacaccgcagatgttgaccatcaacgaggtgaccaac
agcggtcctgtggtgcgcaatcagcccgtgaccgtgatcgtgacggcgacgcaggagctg
agcgacccgctactctactcgttcgactgggacaacaatggcgtgtatgatgtggtagac
caggtcagcaacagcgctgtaaccgtctatccgactgcaggcaattacgtggtgcgggtg
cgcgtgcgcgacgccgacggcggcgaagcaaccgcaaccacgaccgtgcaggtgaatgcc
caggtgatccagattacgcaggtaacgagcgatgcacccaagcgccgtggacaaacggtc
accgtctcggtgacggccgtgcaacagttgaacgagacactgctgtattcgttcgactgg
aacaacgacgaggtctacgaagtggtggatcagacgggcgccactgcctcgacgagctac
gcctccaccggaacgaagacggtgcgcgtgcgcgtgcgcgattcgcaaaacagcgaggcg
gttacgacagcgaacctgctgatcacgccgcagttgctgagtgcgacggcgacgaacgac
ggccctgtgcggcgtgggcagaacgctacggtgacggtgaatgcggtgcaggagctgagc
gacccgttgacgtatgcgtttgactgggacaacgacggcacgtacgacctgacgacgatg
agctcgagtgcggtggtgagctacacgacgacgggagcccggacggtgggcgtgcgggtg
acggatgcggacggcggcgaggtgacgacgagcacggtggtgacggtgacgccgcagaac
ctcacgattacgtcggtggtgaacagcggccctgtagcggtgggtgattctgtgctggtg
acggtgaacgctgtgcaagagctgaacgatgcgcttctctactcgtttgactgggacaac
gatgagacgtatgatgtgatcgatcagccgcttaacagtgcatcgaccagctatgcgaca
cctggtgagaaaactgtacgcgtacgcgtgcgcgatggcaatggcgctgaggcgacggcg
acaactacgttcgaggtgctggaggtcggaggcggtgggtttacagatttcttgtacctg
cccatcgtgaaccgctga
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integrated database retrieval system
