Caldilinea aerophila: CLDAP_38200
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Entry
CLDAP_38200 CDS
T01797
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cap
Caldilinea aerophila
Pathway
cap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLDAP_38200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cap03021
]
CLDAP_38200 (rpoC)
03400 DNA repair and recombination proteins [BR:
cap03400
]
CLDAP_38200 (rpoC)
Enzymes [BR:
cap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLDAP_38200 (rpoC)
Transcription machinery [BR:
cap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLDAP_38200 (rpoC)
DNA repair and recombination proteins [BR:
cap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLDAP_38200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_A_CTD
RPOC_hybrid
PAH_ZNF598
Apolipoprotein
DUF6689
Baculo_PEP_C
Motif
Other DBs
NCBI-ProteinID:
BAM01860
UniProt:
I0I9C2
LinkDB
All DBs
Position
4786153..4790763
Genome browser
AA seq
1536 aa
AA seq
DB search
MEVKDFNAIKISLASPERIREWSYGEVTKPETINYRTLRPERDGLFCERIFGPTRDWECA
CGKYKRVRYKGIVCDKCGVEVAPSRVRRERMGHIELASPVSHIWYVKGVPSRLGLLLNIS
PRHLERVLYFAQYIVTNVNEDARSRAIQRHERELQTRLQRIESEVQEDLTRLETELEQAL
AELDAEEERAIQALNERINEASSQIIAEAQRLQTWIHTNEGKKAPEDKFLSWFDQAVLRK
GEIVSKDYDLVINDLVQQKLDALQQESDAEKADIRMRMSAQRDYVRQELGAQIEELRHKV
EVRQEEVRRQMEAALADLKSIEERQLLTENRYRELSERWGNVFTAGMGAEAVRDIVAKLD
LEKMQKELRREMRTTKSKQRRKKAAKRLRVVENFRKSGNRPEWMILTVLPVIPPELRPMV
QLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDVIVRNEKRMLQEAVDSLIDNGRRG
RAVSRSGKRKLKSLSDLLKGKQGRFRRNLLGKRVDYSGRSVIVIGPDLKLHQCGLPKKMA
LELFKPFVMRRLVENNFAHNIKSAKRMVDRMSPEVWDVLDEITKERPVLLNRAPTLHRLG
IQAFEVVLIEGSAIQLHPLTCAAFNADFDGDQMAVHVPLSDEAVREARELMLATQNLLKP
SSGEPIVGPSKDMVMGVYYLTVDEDENADTATLPIFASMEDAEYAYAMGAIKLRQPIRVF
FTSKYDTISIDTLELSERVLSALKAHGIQTIGQVMDYLAQGERKMIEEIAGFGAAAMEET
RTALRKLGLLGASWPRERLMRTTVGRIIFNRALPEELWFVNELLDRKGVDGVVARCYKHL
GREVTAKTVDNIKDVGFQYATRSGITIAISDINVPARKAEILERTAAEVEKAEQQYRRGL
ITEEELYNKTVELWSRATDEVTEAVKELLSPIEGLGAMARSGATKGGINPVRQLAGMRGL
MADPNGRIIPLPIRSNFREGLTALEYFLSTHGARKGLADTALRTADAGYLTRRLVDVAQD
VIITEEDCGTTAGIWITAEESAAMQETFSERVSGRFLAADLTDPETGEVLLRRNELINEA
ALELLKRHKIEKAYVRTPLTCEARFGLCQHCYGEDLARGGVIRLGEAVGIVAAQSIGEPG
TQLTLRTFHTGGVAGAEDITQGLPRVEELFEARTPKGEAVIAEIDGVVSILREGDVRILR
ISRTDLKRREVVIPDGFEVIVTDGDRVQEDTIIARNGDKTVAAGMEGEIYIEDHIATIRR
EETEVWEVELPANARLRVDEGATVKAGDQLTDGAKNPKEILRISGREATQLYMLSEVQKV
YRGQGVSIHDKHIEVILRQLLRRVMVRTAGDTDLLPGELVDRFKFEDINNYVISKGGRPA
KAEPVVLGLTKAALNTESFLAMASFQETTRVLTEAAIRGQRDDLRGLKENVIIGKLIPVG
TGFNPQRIVPTRIEEEVQLLIDEEVEQDEDLGDLEDVDLGLEDYELEELESVAELDIQPL
GVGLGDEDEEGLELDFDALEEEEEEEGFDDIDVEIE
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atggaagttaaagatttcaacgccatcaagatttccctcgcttcaccggaacgcattcgc
gagtggagctacggtgaggtcaccaaacccgaaacaatcaactaccgcaccttgcggccg
gagcgcgatggccttttctgcgaacgcatcttcggcccgacgcgcgattgggaatgcgcc
tgcggcaaatacaaacgcgtgcgctacaaaggtatcgtctgcgacaaatgtggcgtagag
gtagcgcccagtcgcgtgcgccgcgaacgcatgggccatatcgagctggcttctcccgta
agccatatctggtatgtcaagggcgtgccaagccggctggggcttttgctcaacatcagc
ccgcgccatctggagcgcgtgctctactttgcacagtacatcgtcaccaacgtcaacgaa
gatgcccgctcgcgcgccattcagcgccatgaacgagagctgcagacacggttgcagcgc
atcgagagcgaagtgcaagaagatttaacacggctggaaaccgagttggagcaggcgctc
gccgaactcgacgccgaagaggagcgcgctatccaggcgctcaacgagcgcatcaacgaa
gcctcctctcagatcatcgccgaggcgcagcgtctgcagacgtggatccacaccaacgag
gggaaaaaggcgccggaagataaattcctctcctggttcgaccaggccgtgttgcgcaaa
ggcgagatcgtctcaaaagactacgacctggtcatcaacgatcttgtccaacagaaactc
gatgcgctccaacaggaatcggatgcagaaaaagccgatattcgcatgcgcatgagtgca
cagcgcgactacgtgcgccaggaactcggcgcccaaatcgaagagctgcgccataaagtc
gaagtgcggcaagaagaggtgcggcgtcagatggaagccgccctggccgatctgaagtcg
atcgaagaaagacagttgctcaccgaaaatcgctatcgcgagctgtccgagcggtggggc
aacgtcttcaccgccggcatgggcgcggaagcggtgcgcgatatcgttgccaagctcgat
ctggagaagatgcaaaaagagcttcgccgtgagatgcgcaccaccaagagcaaacagcgc
cgcaaaaaagccgccaagcgcctgcgcgtggtggaaaacttccgcaagagcggcaatcgc
ccggagtggatgatcttgaccgtgctgccggtcattccacctgagctgcgcccgatggtg
caactggacggcggtcgctttgccaccagcgatctgaacgatctatatcgccgcgtgatc
aaccgcaacaatcgtctgaagcgactcatggagctgggtgcgcccgatgtgatcgtgcgc
aacgaaaaacgcatgttgcaagaggcggtcgacagcctgatcgacaacggtcgccgtgga
cgtgcggtcagccgcagcggcaaacgcaagctcaagagcctgagcgacctgctcaagggc
aaacagggacgcttccgccgaaacctgctcggcaaacgcgtcgactactcaggacgctct
gtcattgtgatcggcccggacctgaagctgcaccagtgcggcctgcccaagaagatggcg
ctggagctcttcaagcccttcgtcatgcgacgcctggtcgagaacaactttgcccacaac
atcaagagcgccaagcgcatggtcgatcgcatgagccctgaggtatgggacgtgctcgat
gaaatcaccaaggagcggcctgtgttgctcaaccgcgcgccgacgctgcaccgcctgggc
attcaggcgtttgaagtggttctgatcgaaggcagcgccattcagcttcacccgctgaca
tgtgccgccttcaacgcagacttcgacggcgaccagatggctgttcatgtgccgctgagc
gacgaagctgtgcgcgaggcgcgcgagctgatgctggcgacccagaacctgttgaagcct
tccagcggcgaaccgatcgtcggcccatccaaggacatggtgatgggcgtctactacctg
acggtcgatgaggacgaaaacgcggacacagcgacgctccccatctttgccagcatggaa
gacgcggagtacgcctacgccatgggcgccatcaaattgcgccaaccgatccgtgtattc
ttcacgagcaaatacgacacgatctccatcgacacgctggagctcagcgaacgcgtgctc
agtgcgctgaaggcgcatggcattcagaccatcggccaggtcatggattatctggcgcag
ggcgagcgcaaaatgatcgaagagattgccggctttggtgcggcggcgatggaggagacg
cgcactgccctgcgcaagctgggtttgctcggcgcctcctggccgcgcgagcgcctgatg
cgcaccacggtgggacgcatcatctttaaccgcgccctgccggaagagctctggttcgtc
aacgagctgctggaccgcaaaggcgtggatggcgtggtcgcccgctgctacaaacatttg
ggtcgcgaagtaaccgccaaaacagtggacaacatcaaagatgtcggcttccagtatgcg
acccgctctggcatcaccattgcgatttcggacatcaacgtgccggcgcgcaaagcagaa
attctggagcgcaccgctgctgaagtcgaaaaggctgaacagcagtatcgccgtggcctc
atcacggaagaagagctgtacaacaagacggtcgagctttggtcacgcgccacggacgag
gtcaccgaggccgtcaaggagctgctcagcccgatcgagggactcggcgcaatggctcgc
tccggcgccaccaaaggcggcatcaacccggtgcgtcagctcgcaggcatgcgcggcctg
atggccgaccccaacggccgcatcatcccgctgcccattcgctccaacttccgcgaggga
ttgacggcgctcgaatacttcctgagcacccacggtgcgcgcaaaggcctggccgacacc
gccctgcgtaccgctgacgccggttatctcacccgccgtctggtcgatgtggcgcaggac
gtcatcatcaccgaagaggactgcggcacaaccgctggcatctggattacagccgaagaa
tctgcagccatgcaggaaacgtttagcgaacgcgtctcagggcgcttcctggcggcagat
ctcaccgacccggagaccggcgaggtgctgttgcgccgcaacgagctgatcaacgaggca
gcgcttgagctgctcaaacgccacaaaatagaaaaagcctacgtgcgcacgcccttgacc
tgtgaggcacgcttcggcctctgccagcactgttatggggaagacctggcgcgcggcggt
gtcatccgtctgggtgaagcagtcggcatcgtggcggcacagtcgatcggcgagccaggc
acacagctcacgctgcgcaccttccacaccggcggtgtggccggcgccgaggacatcacg
cagggtctcccgcgcgtggaggagctgtttgaggcgcgcacgcccaaaggcgaagccgtt
atcgccgaaatcgacggcgtggtatcgatcctgcgcgaaggggatgtgcgcatcctgcgc
atcagccgaactgacctgaagcgccgcgaggtcgtgatcccggatggctttgaagtgatc
gtgaccgatggcgatcgcgtgcaggaggacaccatcattgcgcgcaacggcgacaaaacg
gtggcggcgggcatggagggtgaaatctacatcgaagatcatattgccaccattcggcgt
gaagagaccgaggtctgggaggtggagctaccagccaatgcccggctgcgcgtagatgag
ggcgcaacagtcaaggcgggcgatcagcttacggatggcgccaagaacccgaaggaaatt
ctgcgcatatcgggtcgcgaggcgacgcagctctacatgctttccgaagtgcaaaaggtc
tatcgcggccagggcgtgagcatccacgacaaacatatcgaggtgattctacgtcaactt
ctgcgccgcgtgatggtgcgtactgctggagataccgacctgttgcccggggaactggtg
gaccgcttcaagtttgaagacatcaacaactatgtcatctccaagggcggccgaccggca
aaagcggagccggttgtgttgggtctgaccaaagccgcgctcaacactgaaagcttcctg
gccatggcgtcgttccaggagacaacgcgcgtgctgacggaagcggcgatccgcggccaa
cgcgacgacctgcgcggcctcaaagagaacgtcatcatcggcaagttgattccggttggc
accggcttcaacccgcagcgaatcgtccccacccgcattgaggaggaagtccaactgctc
atcgacgaagaagtagagcaggacgaggacctgggtgacctcgaggatgtcgacctgggc
ctggaggactacgagttggaggagctggaaagcgtcgctgaattggacatccaaccgctc
ggcgttggcctcggcgacgaggatgaggaagggttggagcttgacttcgacgccctggaa
gaagaggaagaggaggaagggttcgacgatatcgatgtcgagatcgaataa
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integrated database retrieval system
