Capnocytophaga sp. FDAARGOS_737: FOC45_05015
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Entry
FOC45_05015 CDS
T06329
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
capf
Capnocytophaga sp. FDAARGOS_737
Pathway
capf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOC45_05015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
capf03021
]
FOC45_05015
03019 Messenger RNA biogenesis [BR:
capf03019
]
FOC45_05015
Transcription machinery [BR:
capf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FOC45_05015
Messenger RNA biogenesis [BR:
capf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FOC45_05015
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
AAA_22
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
QGS17654
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All DBs
Position
1142383..1144095
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AA seq
570 aa
AA seq
DB search
MFNFVELKTKKLPELQAIAQQLNVPKYRYLNKLDLINQIIAFQEKGGQTPLPQEDTPKKT
VVAADSQSETKSETRSASKSEAKPEAKSESKPTPKLEAKPQPEAKKKGGKKKIEVPQKVG
SSNQENFAKTTVSKSVRAEEENKGDYKPSFQKKNTSQNTNTPPKAAAPAANYNPNNNYVV
DADNFDKEKKNRYRAPDFEFDSVVDCEGVLDITADGYGFLRSSDYNYLASPDDIYVSPSQ
IRLFGLQTGDTVHGEVRPPKEGEKYYPLLKVIKINGLDPQVVRDRVLFEHLTPLFPNEKF
ELAGRGSTISTRLIDLFAPIGKGQRGMIVAQPKTGKTMLLKDIANAISKNHPEVYLMVLL
IDERPEEVTDMQRSVRGEIISSTFDKEASEHVRIANIVLEKAKRLVECGHDVVILLDSIT
RLARAYNTVQPASGKVLTGGVDANALHKPKRFFGAARNIENGGSLSIIATALTDTGSKMD
EVIFEEFKGTGNMELQLDRRIANRRIFPAIDLMASSTRRDDLLLDENTLNRTWVLRKYLA
EMNPIEAMEFMEKQMKQTRNNQEFLATMNN
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactttgtagagttaaaaacaaaaaagcttcctgaactacaggctatagctcag
cagctaaatgtacctaagtatcgctatctgaataagttagaccttataaatcagattatt
gcctttcaggagaaaggaggacaaacgcctttgcctcaggaagatacccctaagaaaact
gtagtagccgctgatagtcaatcagaaactaagtcagagactaggtcagcatctaaatca
gaagccaaaccggaagccaaatcagaatctaaacctacccctaaattagaggctaaaccc
caaccagaagctaaaaagaaaggtggaaaaaagaaaatagaagttccgcaaaaagtggga
agttctaatcaagagaattttgccaaaacaactgttagtaagtcagttagagcagaagaa
gaaaataaaggggactataagccgtcttttcagaagaaaaatacttcacaaaacactaac
actcctcctaaagcagctgctcctgctgctaattacaatcctaacaataattatgtagtt
gatgctgataacttcgacaaagaaaagaaaaatcgctatagagctcctgattttgagttt
gatagcgtggtagattgcgaaggagtacttgatattacagctgatgggtatggctttttg
cgttcttcggactataattatttagcatcgccagatgatatttatgtatcgccttcacaa
atacgcctgtttggattgcaaaccggtgatacggtacacggagaggtacgtccgcctaaa
gaaggagaaaagtactatccgctgttaaaagtgattaagattaacggtcttgacccacaa
gtggtgcgcgatagggttctttttgagcatcttacgcctctttttcctaatgaaaaattt
gagttagctggtagaggttcaactatttcaacacgtctaatagatttatttgcccctata
gggaaagggcagcgcggtatgatagtggcgcaacctaaaacgggtaaaacgatgttgcta
aaagacatcgctaatgctatcagcaagaatcaccctgaagtgtacctgatggtattgctt
atagacgaacgccctgaggaggtgactgatatgcagcgcagtgtaaggggagagattatc
tcatcaacttttgataaagaggcaagtgaacacgtaagaatagccaatatagtattagaa
aaggcaaaacgattggtagagtgcggtcacgatgtggtaattctgcttgactcaataacc
cgcttggcacgtgcttataatacggtgcaaccggcttcgggtaaggtgcttacagggggg
gtagatgccaatgcgctacacaaacctaaacgcttttttggtgcggcgcgtaatatagaa
aacggagggtcgctatcaattatagctacagctcttacggatacggggtcgaagatggat
gaggtgatttttgaagaatttaaaggaactggcaatatggaactacagttagataggcgt
atagctaaccgccgtattttccctgctatagacctgatggcttcttctacacgtcgtgat
gacttgttattagatgaaaataccctaaaccgtacgtgggtgttgcgtaagtatttggca
gagatgaatccgatagaagccatggaatttatggagaaacagatgaagcaaacacggaat
aatcaagagtttttggcaacaatgaataattaa
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