Capnocytophaga sp. FDAARGOS_737: FOC45_05500
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Entry
FOC45_05500 CDS
T06329
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
capf
Capnocytophaga sp. FDAARGOS_737
Pathway
capf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOC45_05500 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capf03019
]
FOC45_05500 (recQ)
03400 DNA repair and recombination proteins [BR:
capf03400
]
FOC45_05500 (recQ)
Enzymes [BR:
capf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOC45_05500 (recQ)
Messenger RNA biogenesis [BR:
capf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOC45_05500 (recQ)
DNA repair and recombination proteins [BR:
capf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FOC45_05500 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
DUF5552
HHH
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
QGS17743
LinkDB
All DBs
Position
complement(1240460..1242649)
Genome browser
AA seq
729 aa
AA seq
DB search
MKMTKNDLHDALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLE
GTAIVISPLIALMKNQVDAMRGISSTDSIAHVLNSSLTKNEIREVMEDISNGKTKLLYVA
PESLIKEEYANFLKTVPISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNIPIVALT
ATATPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQNTKKSGI
IYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIGKPIAEQ
EIGQALLQDIVAYAETSSSRRKFILHYFGEEFDEVNGEGANMDDNVRFPKEKKEAKDDVV
KLLNVIIATKQKFKAKEIVNTLIGKVSALIKAHRIDEQDFFGIGKDKEDAYWMALLRQVM
VNGLIRKDIETYGVMFITEKGKEYLKNVTSFMMTEDHTFEEEPEDPNNGNTSVADPVLLE
MLKDLRKKVAKQKGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKFGAEFVK
LIERYVEENDIVRAEDLIVKTTGSNSSLKLFIIQNIDRKLPLPDIAKAKGLEMDEFLKEM
EQIVYSGTKLNIDYWVNEIFDEEQQEELHEYFMEADSDKISIASKEFGGDYEDDELRIYR
LKFISEVAN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgacaaagaatgatttacacgatgcgctgaagcattacttcggttttgaagcg
tttaaagggcatcaagaagagattattaccagtgtgattaacaaggagaatacctttgtt
ataatgcccacaggtggtggtaaatcattgtgctaccaactacctgctttagttttagaa
ggcactgccattgtgatttcgcctctgattgctctgatgaaaaaccaagtagatgcgatg
cgaggtatttcgtctactgatagtattgcgcacgtactcaattcatcacttaccaaaaat
gaaattcgcgaagtgatggaagatattagcaatggcaaaaccaaattattatatgtagct
cctgaatctctcatcaaagaagaatatgctaacttcttaaaaacagtgccaatatcattt
gttgcagtagatgaagcgcactgtatctcagaatgggggcacgacttccgccccgaatac
cgaaatataaaaactattattgaacgattaggtagtaatatccctatagtagcccttacg
gctacagctacccctaaagtgcaagaagacatactgaaaaacttaggtatgttagaagct
aatgtattcaaatcgtcattcaatcgccctaatttatactacgaagtacgccctaagact
aagaatgttgatgctgatattattcgatttgtaaagcaaaatactaagaaatctggtatt
atatattgtcttagcagaaagaaagtggaagatcttgctcaaacactacaagtaaatggc
atttcggcagtaccttaccacgcgggcttagacgctaaaacacgtgctaaacatcaagat
atgttcttaatggaggaggtagatgtagtcgtagctacgattgcttttggtatgggcatt
gataaacctgatgtacgcttcgttattcaccacgatattcctaaaagtattgagagttat
tatcaagaaacaggacgtgccgggcgtgatggtggtgaaggacattgtttggctttctac
tcatacaaagatgttgagaagttagagaaatttatgataggcaaacctatagctgaacaa
gaaataggacaagccttactacaagatatagtggcatacgcagagacctcaagttcacgt
cgcaagtttatattgcactactttggagaagagtttgatgaagtgaatggtgaaggtgct
aatatggatgacaatgtacgtttccctaaagaaaagaaagaagctaaagatgatgtagta
aagctactgaatgtgattatagctactaaacagaaatttaaagctaaagagatagtaaat
acactcattggtaaagtaagcgctctcataaaagcacaccgcatagatgaacaagatttt
tttggtataggcaaagataaagaagatgcttactggatggcacttctacgccaagtaatg
gtaaatggtcttatccgcaaagacattgagacatatggagtgatgtttatcacagaaaaa
ggtaaagagtaccttaaaaatgtaacctcctttatgatgactgaagaccatacttttgaa
gaagaaccagaagaccctaataatggtaatacttcagtagcagaccctgtactattagaa
atgcttaaagatttgcgtaagaaagtagctaaacaaaaaggagtgccaccatttgtagtg
ttccaagatccttcattagaagatatggcactgaaataccctattaccattcaagaactt
accaatgttcacggtattggagagggtaaagcaaagaaatttggagctgagtttgtaaaa
cttattgagcgttatgtagaagaaaatgatattgttagagctgaagaccttatagtaaaa
actacgggctctaactcgtcattgaaattgtttatcattcagaatatagaccgcaaattg
ccattacctgatattgctaaagctaaaggtttagaaatggatgagttcttaaaagaaatg
gaacaaatagtatatagcggtactaagctaaacattgattattgggtaaatgaaatcttt
gatgaagaacaacaagaagaactacatgaatattttatggaagcagatagtgataagatt
tcaatagcttcaaaagagtttggtggtgattatgaagatgatgaactaagaatctaccga
cttaaatttattagtgaagtagcaaattaa
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