Capnocytophaga sp. FDAARGOS_737: FOC45_05900
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Entry
FOC45_05900 CDS
T06329
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
capf
Capnocytophaga sp. FDAARGOS_737
Brite
KEGG Orthology (KO) [BR:
capf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
capf03009
]
FOC45_05900 (rlmD)
Enzymes [BR:
capf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FOC45_05900 (rlmD)
Ribosome biogenesis [BR:
capf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FOC45_05900 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
TRM5-TYW2_MTfase
Methyltransf_15
TRAM
Methyltransf_11
PCMT
Cons_hypoth95
PrmA
RrnaAD
UPF0020
Methyltransf_12
FtsJ
N6_N4_Mtase
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
QGS17814
UniProt:
A0A6B8TG69
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All DBs
Position
1322214..1323617
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AA seq
467 aa
AA seq
DB search
MSKKKNIIIENVSVIDAGAKGKSVAKAPDGRVIFVTNAVPGDVVDVQTTKKKSAYYEGFA
VKFHQLSAERTTPVCSHFGYCGGCKWQDLAYERQLYYKQKEVENNLVRLGRIAIPQLMPI
IGSDDIYFYRNKMEFSFSDMRWLTPEEIKKADEITDRNGLGFHIAGAWDKVLDIKKCYLQ
AVPSNAIRLEIKRFALENEMSFYSPRMQQGLLRSMIIRLSSTGELMVVIQFFSEDEKIEL
LLAHLANHFPEITSLQYCINSKGNDALYDQDIICYKGQDCIYEEMEGLRFKINAKSFYQT
NSKQAQRLYEVARDFADLKGDELVYDLYTGTGTIAQFVAKRAKRVVGVEAVPEAIADAKA
NAAANGIDNVSFYVGDMKNVFNEAFIAANGVPDVIITDPPRDGMHKDVVAQILHIAPAKV
VYVSCNSATQARDLALMDEQYKVTKVQPVDMFPQTYHVENVVLLEKR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaaaaagaatattattatagaaaacgtgtcggttatcgatgcgggtgccaag
gggaaaagtgtagctaaagcccctgatggacgcgttattttcgtaactaatgccgtacct
ggtgatgtagtcgatgtgcagactactaaaaagaaatccgcttattatgaggggtttgca
gtgaaattccaccagttgtcagctgaacgtactacccccgtatgttcacactttgggtat
tgcggaggctgcaaatggcaagatttggcttacgaacgtcagttgtattacaaacaaaaa
gaagtggagaacaaccttgtgcgtttggggcgcatcgctattcctcaactgatgccgatt
ataggctcagatgatatttatttctaccgaaataagatggaattttcgttctctgatatg
cgctggcttactcctgaagagattaaaaaagctgacgaaataactgatagaaacggattg
ggctttcatattgcaggagcttgggacaaggtattagatattaaaaagtgttacctgcaa
gccgtcccatctaatgctatccgattagaaatcaaacgttttgctttagaaaacgaaatg
agtttctacagtccgcgtatgcaacaaggactattgcgctcaatgataataaggctgagc
tctacaggcgagttgatggtcgtaatacagttttttagcgaagatgagaaaattgaatta
ctattggctcacttagccaaccatttccctgaaattacttcgttgcagtattgtatcaat
agcaaaggcaacgatgcgctatacgaccaagatataatatgctataaagggcaggactgt
atttacgaagaaatggaaggcttgcgcttcaagataaatgcaaagtcgttttatcagacg
aactctaaacaagcgcaacgattgtatgaggtagcgcgcgactttgccgacctaaaaggc
gatgaactggtatacgacctttatacaggcacgggtactattgcgcagttcgtagccaaa
cgcgctaaacgagtagtaggggttgaggctgtacctgaggcgattgccgatgcaaaagcc
aatgctgcagcaaatggtatcgacaatgttagtttctatgtaggcgatatgaagaatgtg
ttcaacgaggcgtttatagcagctaatggtgtacccgatgttatcatcaccgacccgcca
cgagatggtatgcacaaagatgtagtagcgcaaatactgcatattgctccagctaaagta
gtatatgtcagctgcaatagcgctacccaagcccgcgaccttgcgctaatggatgagcaa
tataaagtgacgaaagtacagcccgtagatatgtttccacagacttaccacgtagagaat
gtagtgctcttagaaaagcgataa
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