Capnocytophaga sp. FDAARGOS_737: FOC45_09450
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Entry
FOC45_09450 CDS
T06329
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
capf
Capnocytophaga sp. FDAARGOS_737
Pathway
capf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
capf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOC45_09450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
capf03021
]
FOC45_09450 (rpoC)
03400 DNA repair and recombination proteins [BR:
capf03400
]
FOC45_09450 (rpoC)
Enzymes [BR:
capf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOC45_09450 (rpoC)
Transcription machinery [BR:
capf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FOC45_09450 (rpoC)
DNA repair and recombination proteins [BR:
capf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FOC45_09450 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QGS18479
UniProt:
A0A6B8TQE7
LinkDB
All DBs
Position
complement(2139366..2143649)
Genome browser
AA seq
1427 aa
AA seq
DB search
MAKDKNTTVPKFDKISIGLASPESILAVSRGEVTKPETINYRTHKPERDGLFCERIFGPV
KDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERVGHINLVVPIAHIWYFRSLPNKIG
YLLGLPSKKLDMIIYYERYVVIQPGVAKGPEGEDIQYLDFLSEEEYLAILESLPADNQYL
EDTDPNKFVAKMGAECLLELLERLDLDALSYDLRHKANNESSKQRKTEALKRLQVVEAFR
ESQKNRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLME
IKAPDVILRNEKRMLQEAVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLLG
KRVDYSARSVIVVGPELKMYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDKK
EPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD
QMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYITKGRKSTPEYP
IKGEGLVFYSPEEVNIAYNEGKLSLNAFIKVRVRDLDEEGNVYYHLVETTTGRVLFNELV
PLEVGYVNEVLTKKSLRDIIGRILKATSIPVTGDFLDKIKNMGYRFAFKGGLSFSLGDII
IPQEKADMIAEANGLVDGIMMNYNMGLITNNERYNQVIDVWTSTNAQLTELAMKRISTDQ
QGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVRALKKNEE
VVESLGERILGRVSLHDVYNPLTEELLVAAGEEITEKIVDKIDAAPIEMVEVRSALTCEA
KHGICAKCYGRNLSTGRMVQRGEAVGVVAAQSIGEPGTQLTLRTFHAGGVAGNVSEENKT
EARFDGILEIEDLRVVTSKDGDQSVDVVIRSSELKVLDPTTRMVLQTHDIPYGAHIFVKD
KEEVKKGTLLFQWDPYNAVIISEFSGKIAYEDIEQGVTYQVEIDEQTGFQEKVIVESRNK
KLIPTLLIVDKNGETLRSYNLPVGAHIMVDNNSKIEEGKVLVKIPRSSAKAGDITGGLPR
VTELFEARNPSNPAIVSEIDGVVSFGKIKRGNKEVIVTSRLGEERKYLVKLSSQILVQEN
DYVRAGKPLSDGSVTPDDILRIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVIVRQMM
RKVEIQDPGDTLYLEGQLVHKDDFIEENDRLFGKKVVEDAGDSENLKAGQIVSLRELRDE
NSLLKRSDKNLVVARDIIPATAMPVLQGITRASLQTKSFISAASFQETTKVLNEAAVSGK
VDSLDGLKENVIVGHRIPAGTGLKRYEKIIVGSKADLEPVVEKKKSR
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagataaaaatacaactgttccaaaatttgataagatttctattggcttagcc
tctcccgaatctatcttggctgtttcgcgcggcgaggttactaagcccgaaactatcaac
tatcgtactcacaagccagaacgagatgggcttttttgtgagcgtattttcggtcctgtt
aaggactatgaatgtgcctgcggtaagtataagcgtatccgctataagggtatcgtgtgc
gaccgttgtggggtagaagtaactgaaaagaaagtacgccgtgaaagagtggggcatatc
aacttagtggtgcctatcgcccatatttggtatttccgctcattgcctaacaaaataggt
tatctgctcgggctgccttctaaaaagttggatatgattatctactacgaacgctatgtg
gtgatacagcccggtgttgctaaagggcctgaaggtgaagatattcagtacctcgacttc
ctctctgaagaagaatacctcgctatactcgagtctcttcctgctgataaccaatatctt
gaagatactgatcctaataagttcgtagccaaaatgggggctgaatgcctcttagagctc
ctcgagcgtctcgacctcgatgccctttcatacgacttgcgccataaagctaataacgaa
agttctaaacaacgcaaaaccgaagcgctaaaacgcctacaagtggtagaagctttccgc
gaatcacaaaagaaccgcgagaataaacctgagtggatgattatgaaggtgatacctgtt
atcccaccagaattgcgtccgttagtacctctcgatggaggtcgttttgctacttcagac
cttaatgatttataccgccgtgtaatcatacgcaataaccgtttaaaacgtttgatggaa
atcaaagcacctgatgttatcttgcgtaatgaaaaacgtatgctacaagaggcagtcgat
tcacttttcgataacactcgtaaatcatcagcggtaaaaacagaatctaacagaccttta
aaatctctttctgactcgctcaaaggaaaacaaggtcgtttccgtcagaacctactcggt
aaacgtgttgattactcagcgcgttcagttatcgtcgtaggccctgaactaaaaatgtac
gaatgcggtttgcccaaaaatatggcagccgaactatataaacctttcgtgatacgcaag
ctcatcgagcgtggtatcgtgaagacggtgaaatctgctaagaaaatcatcgataaaaaa
gaaccagtagtatgggatattttggaaaacgtgataaaaggtcaccctgtactactgaac
cgtgcccccacgctacaccgtttgggtattcaggcattccagcctaaactcatcgagggg
aaagctatccagctgcacccattggtgtgtacagcgttcaacgccgacttcgacggtgac
cagatggcggtacacttgccattaggccctgaagcgatactcgaggcacaactcttgatg
ttggcatcgcacaatatcttgaaccctgctaatggttcacctattaccgtaccttcgcag
gatatggtcttggggctttactacatcaccaaaggacgtaaatcaacacctgaatatcct
atcaaaggagaagggttggtattctattcgcccgaagaggtaaatatagcctacaacgaa
gggaaactaagtctcaacgcctttataaaagtgcgtgttcgcgacctcgatgaggaaggt
aatgtatattatcacttagtagaaaccaccacaggacgtgtgcttttcaatgagttagta
cctttagaagtagggtatgtaaacgaggtgcttactaagaagtcattgcgcgatattatc
gggcgaatccttaaggctaccagcatacctgtaacaggcgacttcctcgataaaataaag
aatatgggataccgtttcgctttcaaaggcggactatcattcagcttaggcgacattatt
attccgcaagaaaaagcagatatgattgctgaagctaatggtttggtagacggtattatg
atgaactataatatgggtctcatcaccaataacgagcgttataaccaagtgattgatgtg
tggacttctaccaatgctcagcttactgagttggctatgaagcgtatcagcaccgaccaa
caagggtttaactctgtgtatatgatgctcgactcaggagcccgtggttctaaagaacag
atacgtcagcttaccggtatgcgtggattgatggctaagcctaagaaatcaacagccgga
gggggcgaaatcattgagaacccgattctttctaactttaaagaggggctttcaatcctc
gagtactttatctctacccacggggctcgtaaaggtcttgccgataccgcgcttaagact
gccgatgccggttatttgacccgtcgtttggtagacgtatcacaagatgttatcatcaat
accgaagattgcggtactctacgtggggttgaagtacgtgcccttaagaaaaacgaagag
gtggtagaaagtttgggcgaacgtatactcggtcgtgtatcgctacacgatgtgtacaac
ccacttaccgaagagttattggtagctgctggcgaagaaattactgaaaaaatagtagat
aagatagatgcagcacctattgaaatggtagaggtgcgctcagcccttacttgcgaggca
aaacacggtatctgtgcgaagtgctatggacgtaacctttctactggtcgtatggtacaa
agaggagaggccgtaggggtagtagctgctcaatctatcggtgagcctggtacacagctt
acactacgtactttccacgccggtggggtggcaggtaacgtgtctgaagaaaataaaaca
gaagcccgttttgacggtatattagaaatagaagacctacgcgtggtaaccagcaaagat
ggcgaccaaagtgtagacgtagtaatacgctcatcagagctaaaagtactcgaccctact
actcgtatggtgctacaaacacacgatattccttatggggcacacatctttgtaaaagac
aaagaagaggtgaagaaaggtactttgctcttccaatgggatccgtacaatgcggtaatc
atttcagagttctctggtaagatagcttatgaagatatcgaacaaggggtaacttaccaa
gtagaaatagacgagcaaacaggcttccaagaaaaggtaatcgtagaatctcgtaataag
aagttgatacctaccttattaatcgttgataagaatggcgaaacactccgttcttacaac
ttgccggtgggtgcccacataatggtggataacaacagtaagatagaagagggtaaagta
ttggtgaaaataccgcgtagttcagctaaggcgggtgatatcaccggtggtctaccacgt
gtaactgagttgttcgaagcacgtaacccttctaaccctgctattgtgtcagaaattgac
ggggtagtgtcattcggaaaaataaaacgtggtaataaagaagtaattgtaacttctcgt
ttaggtgaagagcgcaagtatttggtgaaactatcaagtcagatattggtgcaagaaaac
gactatgtgcgtgctggtaagccgttgtcagacggttctgtaacgcctgacgatatacta
cgcattaaagggccatcggctgtacaacagtacttagtaaacgaagtacaagaggtatac
cgactacaaggggtgaagattaacgataagcactttgaggtaatcgttcgtcagatgatg
cgcaaggtagaaatacaagacccaggagatacactttatctcgaaggtcagttagtacat
aaagacgactttatagaagaaaacgatagactctttggtaagaaagtagtagaagatgca
ggcgactctgaaaacctaaaagcaggacagatagtaagtctccgcgaactacgcgatgaa
aattcattgctaaaacgctctgataagaacttagtagtagctcgcgacatcataccggct
acagctatgcctgtattacaaggtattactcgtgcgtcattacaaactaagtcgtttatt
tcagcagcatcgttccaagaaactactaaagtactcaatgaggctgcggtaagcggtaag
gtagattcgttagacggactaaaagagaacgtaattgtaggacatcgtatacctgcaggt
actggtcttaaacgttatgagaagataatcgtaggttctaaagctgacttagaaccagta
gtggaaaagaaaaaatcgagatag
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integrated database retrieval system
