Capnocytophaga sp. FDAARGOS_737: FOC45_11110
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Entry
FOC45_11110 CDS
T06329
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
capf
Capnocytophaga sp. FDAARGOS_737
Brite
KEGG Orthology (KO) [BR:
capf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
capf03016
]
FOC45_11110
Enzymes [BR:
capf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FOC45_11110
Transfer RNA biogenesis [BR:
capf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FOC45_11110
Prokaryotic type
tRNA splicing ligases
FOC45_11110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGS18787
LinkDB
All DBs
Position
2477703..2479094
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AA seq
463 aa
AA seq
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MANLKLKGKDLLKLGFPNNQSINVALEVMKRNYATKNLAYVKSVLEDILKNPAQYEGHLT
FGQIAEALLSSTKTEKRQLNSLRAPYHIFGEDITEEAKTQLYTALKLPISVGGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGLDIGCRMCLSILDIPVSYLSGARDKYEKALAEHTKFG
MYETHKSHVEHEIFDRDTFSLIPILKRLKDKAIKQMGTSGSGNHFVEFGEVELLEDDPQI
GLPKGKYLGILSHSGSRGFGAEIAQYYVRVAAEQCPLPKEAQQFAWLDLSTHLGLEYWTA
MNLAGDYASACHDDIHRRLIRAVGGRLRARIENHHNFAWKEIHNGKEVVVHRKGATPAGE
GVLGIIPASMTDAGYIVRGKGNAESFSSASHGAGRAFSRNESRNRFTSSDIKKALKAKDI
TLIGGNAEEAPMAYKNIETVMQSQRDLVEVIGRFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatttaaaacttaaagggaaagacctactcaagttaggtttcccgaataatcaa
tctattaatgtagcgttggaagtgatgaaacgcaattacgctactaaaaacttagcgtat
gtaaagtcggtacttgaggatattctaaaaaatcctgcacagtacgaaggtcaccttact
ttcgggcagatagccgaagcgttgctttcgtctactaaaaccgaaaaacgacagctcaat
agcttgcgcgcgccttatcacatctttggcgaggacatcaccgaagaggcaaaaacgcaa
ctctatacggctctgaaactccctatttcggttggcggtgccctgatgcccgatgcccat
agtggctatggtttgcccattgggggcgtgctggcggtagagaatgcggtcattccttat
ggggtgggcttggacatcggttgccgtatgtgccttagtatcttggatatccctgtgtcg
tacctctcaggggcacgcgataagtacgagaaagcccttgccgagcatacgaagtttggt
atgtacgaaacccacaaatcgcacgtagaacacgagattttcgaccgcgatactttttcg
cttatccctatcctcaaacgtttgaaagataaggcaatcaagcagatgggtacttcgggc
agtggcaaccactttgtggagtttggcgaggtagagcttttagaagacgacccacaaata
gggctacctaaaggcaagtacttgggaatcctttcgcatagcgggtcgcgcgggttcggg
gcggagatagcgcaatattacgtgcgcgtggcagccgaacaatgtccgctacccaaagaa
gcacagcagtttgcgtggctcgacctcagcactcacttagggttagagtattggacggct
atgaaccttgcaggcgattacgcttcggcttgtcacgatgacattcaccgccgacttatt
cgcgcggtaggcgggcgactaagagcgcgtattgagaaccatcataactttgcgtggaaa
gaaattcataacggcaaggaggtggtagtgcaccgcaaaggggcgactcctgctggcgag
ggggtattgggcattatccctgcctcgatgaccgatgctggctatatagtgcgcggcaag
ggcaatgctgagagttttagttcagcctcacacggggctgggcgtgccttctcgcgcaat
gagagtagaaatcgctttaccagttcagatattaaaaaagccctcaaagccaaagatatt
acccttattgggggcaatgccgaagaagcccctatggcatataaaaacatcgaaacggta
atgcaatcgcaaagagatttggtagaggtaatagggcgctttcagcctcgtattgtgcgt
atggataagtaa
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