Capnocytophaga sp. H4358: CGC49_02675
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Entry
CGC49_02675 CDS
T05519
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caph
Capnocytophaga sp. H4358
Pathway
caph03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caph00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGC49_02675 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caph03021
]
CGC49_02675 (rpoC)
03400 DNA repair and recombination proteins [BR:
caph03400
]
CGC49_02675 (rpoC)
Enzymes [BR:
caph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGC49_02675 (rpoC)
Transcription machinery [BR:
caph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGC49_02675 (rpoC)
DNA repair and recombination proteins [BR:
caph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGC49_02675 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Apocytochr_F_C
Peptidase_M23
BSH_RND
Seadorna_Vp10
Phage_Gene33
Motif
Other DBs
NCBI-ProteinID:
ATA72305
LinkDB
All DBs
Position
complement(630945..635237)
Genome browser
AA seq
1430 aa
AA seq
DB search
MARVKDKVTTTKFDKISIGLASPESILAVSRGEVIKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKGPDGEDIQPMDFLTEEEYLNIMETLPVENQY
LEDTDPNKFVAKMGAECLLDLLQRLDLDELSYDLRHKANSESSKQRKTEALKRLQVVEAF
REAKNNRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILDNVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKGRRSTPEY
PIKGEGLTFYSAEEVNIAYNERKLNLNAFIKVRVRDLGENGEEVYKVIETTTGRVLFNEV
VPREAGYINEVLTKKSLRDIIGHILKSTSIPTTAEFLDKIKNMGYKFAFQGGLSFSLGDI
IIPQEKEKMIAEANGLVEGIVANYNMGLITNNERYNQVIDVWTSTNAQLTELAMKRISSD
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTVGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTDDCGTLRGVEVRALKKNE
EVVETLGERILGRVSLHDVYNPLTEELLVKAGDEITEKAVAKITEAPIEMVEVRSALTCE
AKHGICAKCYGRNLSTGKMVQTGEAVGVVAAQSIGEPGTQLTLRTFHAGGTAGNISEESK
LEARFDGVVEIDDLRTVKGQDYEGNPVNVVISRTSELKVVEPKSGLVLHTHNIPYGAHIF
VKDKQEVNKGDVLCQWDPYNAVIISEFSGKIAYEGIEQGVTYQIEIDEQTGFQEKVIVES
RNKRLIPTLLIQDKDGETFRSYTLPVGAHLMVDDGSKIKEGKVLVKIPRRSAKSGDITGG
LPRVTELFEARNPSNPAIVSEIDGVVSFGKIKRGNREIVIESKTGEVRKYLVKLSNQILV
QENDFVRAGMPLSDGSVTPDDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVIVR
QMMRKVEIQDPGDTLFLEGQLVHKDDFIEENDKLFGQKIVEDAGDSENLKAGQIVSLRQL
RDENSLLKRADKNLVEARDVIPATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
NGKVDFLDGLKENVIVGHRIPAGTGLKRYEKIIVGSKAEEEVVVEKKKSR
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagtaaaagacaaagttacaacgacgaagtttgacaaaatttctattgggttg
gcatcgcctgaatctattttggcagtttcgcgtggtgaggttattaaacctgagacgatt
aactatcgtacgcacaaacctgagcgagatgggttgttctgtgagcgtatttttgggcct
gttaaggactatgaatgtgcttgtggaaaatataaacgtattcgttacaaagggattgtt
tgcgaccgttgtggggtagaagtaacagagaaaaaagtgcgtcgtgatagagtagggcat
atcaacttagtggtaccgattgcacacatttggtatttccgatcattaccgaataaaatc
ggatatttgttgggattgccgtccaaaaaattggatatgattatctactatgagagatat
gtggttatccaaccaggaattgcaaaaggaccagatggcgaggatatccaaccgatggat
tttttgacggaggaagaatatctaaatattatggaaactcttcctgttgagaatcagtat
ttagaagatactgacccgaataaattcgttgccaaaatgggagctgaatgtcttttagat
ttgttgcaacgtttggatttggacgaactttcgtatgatttacgccataaagctaacagt
gaaagttctaaacaacgtaaaacagaggctttgaagcgtttgcaagtggttgaagcgttt
cgtgaggcaaaaaataatcgtgaaaataaacctgaatggatgataatgaaggtaattcct
gtgattccgcctgagttgcgtccgttggtgccgttggatggagggcgttttgcaacttct
gatttgaatgatttgtatcgtcgtgtgattattcgtaataatcgtttgaagcgattgatg
gaaatcaaagcacccgaggtaattttgcgtaacgaaaaacgtatgttacaagaatctgtg
gattcattgtttgataacacacgtaaatcatcagcagtaaaaacggaatcaaatcgtccg
ttgaagtcattgtctgattcattgaaaggtaagcaaggtcgtttccgtcagaatttactt
ggaaaacgtgtggattactcagcacgttctgtaattgtggtagggcctgaacttaaatta
tacgagtgtggtttgcctaaaaatatggcagcagaactttacaaaccgtttgttatccgt
aagttaattgagcgcggaattgtaaaaacagttaagtcagctaagaaaattatcgataag
aaagagcctgtagtttgggatattttagataacgtgattaaagggcatccagtgcttttg
aaccgtgctcctacgttgcaccgtttgggtatccaagcattccagccgaagttgattgaa
ggtaaagcgatccagttgcacccgttggtgtgtacggcgtttaatgctgacttcgacggt
gaccaaatggcggtacacttgccgttggggcctgaagctattttggaagctcaattgttg
atgttagcatcacataatatcttgaatcctgcgaacggttctccaattacagtaccttct
caagacatggttcttggcttgtattatatgaccaaaggaagacgttcaacacctgagtat
ccaattaaaggagaaggcttgacattctattctgcggaagaggtaaatatcgcctacaat
gaaagaaagttgaatttgaatgcctttatcaaagtacgtgtaagagatttaggagaaaat
ggtgaagaagtttacaaggtaattgaaactaccacaggtcgtgtattgttcaacgaagtg
gtgccacgtgaagcaggatatatcaacgaggtattgaccaaaaaatcgttgcgagacatt
attggacatattttgaaatcaacaagtattccaacgacagcggaattcttagataaaatt
aaaaatatgggttacaaattcgctttccaaggtggattgtcattcagtttaggggatatt
attattccacaagaaaaagaaaagatgattgccgaggcaaacggattggttgaaggtatt
gtagccaactataatatgggacttatcaccaataacgagcgttataatcaggtgattgat
gtgtggacatctactaatgctcagttaacagaattggctatgaagcgaatcagtagtgat
caacaagggttcaattctgtatatatgatgttggattcaggagcgaggggttcaaaagag
cagattcgtcagttgacaggtatgcgtggattgatggcaaaacctaaaaagtcgactgta
ggaggaggtgagattatcgaaaacccaatcttgtcgaactttaaagagggattatcaatc
ttagaatactttatttcaacgcacggagctcgtaaaggtcttgccgatacggctttgaaa
acagcggatgctggttacttgacccgtcgtctggtggatgtatcgcaagatgtaattatt
aatacagatgattgtggtacattacgaggagtcgaagttcgtgctttgaagaaaaacgaa
gaggttgtagaaactttaggagagcgtattttaggacgtgtttcattgcacgatgtttac
aatccattaaccgaagaattgcttgttaaagcaggagatgaaattactgaaaaagctgta
gctaagattacagaagctccaattgaaatggtggaagtacgttcagcacttacgtgtgaa
gcaaaacatggaatttgtgcaaaatgctacggacgaaacctttcaacaggtaaaatggta
caaacgggagaggctgttggagttgttgctgcacaatctatcggtgagccaggtacacag
cttacgcttcgaacattccacgcagggggtacagcaggaaacatctctgaggagagcaag
ttagaagctcgtttcgatggagtcgttgaaattgatgatttgcgaacagtgaaaggacaa
gattatgaaggaaatccagtgaacgttgtcatttcacgtacttcggagttgaaagtggtt
gaaccaaagtcaggtttggtactacatactcataatattccatatggggcacacattttt
gttaaagacaagcaagaagttaataaaggcgatgttctttgccagtgggatccatataat
gccgtgattatctcagagttttcagggaaaattgcttatgaaggtatcgaacaaggggtc
acttaccaaatcgaaattgatgagcaaacaggattccaagaaaaagtgattgttgaatca
agaaataaacgcttgattccaacgttattaattcaagataaagacggagagaccttccgt
tcctacactttgccagttggagcacacttgatggtggacgatggaagtaagattaaagaa
ggtaaggtattggtgaaaatcccacgtagatcagcaaaatcgggtgatattaccggaggt
ttaccacgtgttactgaattgttcgaggcacgtaatccttccaatccagcaatcgtttcg
gaaattgacggggtagtttctttcggaaaaataaaacgaggtaaccgagaaattgttatt
gaatccaaaacaggtgaagttcgcaaatatttggtgaagttgtctaaccaaattttggta
caagagaatgactttgtacgtgcgggtatgcctctttctgatggttctgtaactcctgat
gatattttgaatattaaaggaccttctgccgttcagcagtatttagtaaatgaagttcaa
gaggtatatcgtttgcaaggggtgaaaatcaacgataaacattttgaggtgattgtacgt
cagatgatgcgtaaggttgaaattcaagatccaggtgacactctattcctagaaggacaa
ttagttcacaaagatgatttcattgaggagaacgacaaattattcggacagaaaatagtt
gaagatgcgggagattctgaaaaccttaaggcaggacaaatcgtttctttacgtcagttg
cgtgatgaaaattccttgctaaaacgagctgataaaaatttagtagaggctcgtgatgtg
attcccgcaacggcaacgcctgtactacagggaattacaagagcttcgctacaaacaaaa
tcgttcatttcagcagcatcattccaagaaacaactaaagtcttgaatgaagcagcagta
aacggaaaagtggatttccttgacggattgaaagagaatgtaatcgttgggcatagaatt
ccagcgggtacaggtctgaaacgttacgagaaaattatcgtaggttcaaaagcagaggaa
gaagtggttgttgaaaagaaaaaatcaagatag
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