Capnocytophaga sp. H4358: CGC49_07730
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Entry
CGC49_07730 CDS
T05519
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
caph
Capnocytophaga sp. H4358
Pathway
caph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC49_07730 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caph03019
]
CGC49_07730 (rny)
Messenger RNA biogenesis [BR:
caph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CGC49_07730 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
FUSC
Rossmann-like
DUF99
DUF4407
Motif
Other DBs
NCBI-ProteinID:
ATA73172
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All DBs
Position
complement(1805903..1807471)
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AA seq
522 aa
AA seq
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METVILGIVVAGIVGIALGFAIAKVLEKKNASKIISEAKTEANTILKEAKSEGENIKKDK
ILQAKEKFLELKSEHEKVIASKDKKMAEAEKRIRDKESQVSNELAQNKRLKDELEEKNKE
AEHRLQSLNKKQEEIERLHKSQVKQLEVISGLSAEEAKTQLTDSLRSEAQADAMAYIQST
IEEAKLTARQEAKKIVINTIQRIGTEEAIDNCVSVFNLESDDVKGRIIGREGRNIRALEA
ATGVEIIVDDTPEAIILSCFDAVRREIARLSLHKLVTDGRIHPARIEEVVEKTTKQIEEE
IIDIGKRTIIDLGIHGLHPELVKCVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNV
KLAKRAGLLHDIGKVPQVETEVPHAILGMEWAEKYGEKPEVCNAIGAHHDEIEMTSLLSP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEDAAFSFNGVKKAYAIQAGRELRVIVESEK
VSDDKAAELSFNLSQKIQTDMTYPGQVKITVIRETRAVNIAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagtaatattaggaattgtggtcgcaggaatcgtagggattgccttaggattt
gccatcgcaaaggtattggagaaaaaaaacgcttcaaaaattatctcagaagctaaaaca
gaagcaaatactattttaaaagaagctaagagcgagggtgaaaacatcaaaaaagacaaa
atcctacaagcaaaagaaaaattcctagaactcaaaagcgaacatgaaaaagtcattgcc
agtaaagacaaaaaaatggcagaggctgaaaaacgtatccgtgacaaagaatcgcaggtt
tcaaacgaattagctcaaaacaaacgacttaaggacgaattggaagagaaaaacaaagaa
gccgaacatcgtctacaatcacttaacaaaaaacaagaagaaattgaacgtctacacaaa
agtcaagtaaaacaattagaggttatttcgggactttctgctgaggaggcaaaaactcaa
ttgacagattcattacgaagtgaggctcaggctgatgcgatggcatatatccaaagtact
atcgaggaggcaaagttaactgcccgtcaagaagctaaaaaaatcgtcatcaacaccatt
caacgcattggaactgaagaagctatcgacaactgtgtgtcggtttttaacttagaatcg
gacgatgtaaagggtcgtataatcggacgtgaagggagaaacattcgtgctttggaagcc
gccactggtgtagaaatcatcgtggacgacactcctgaagccatcatcctatcttgcttc
gacgctgtacgaagagaaatcgcacgattgtcactacataaattagttacggacggacgc
attcaccctgctcgtattgaagaagttgtagaaaaaactaccaaacagattgaagaagaa
attatcgatattggtaaacgaaccataattgatttgggaattcacggtttacatccagag
ttagtaaaatgtgtaggaagaatgaagtatcgttcttcttatgggcaaaaccttttacaa
cactctcgtgaggtagcaaagctatgtggtgtaatggctgccgaattaggactaaatgta
aagttagcaaaacgtgcaggattactacacgatatagggaaggttcctcaagtagaaacc
gaggttcctcacgccatcttaggaatggaatgggcagaaaaatacggcgaaaaacctgaa
gtttgcaacgctattggggctcaccatgacgaaattgaaatgacttccctattatcccct
atcgttcaggtgtgtgatgctataagtggtgctagaccaggggctcgtcgtcaggtatta
gattcttacattcagcgcttaaaagacttggaggatgcagcgttctctttcaatggcgtg
aaaaaagcatatgctattcaagcaggacgggagttgcgtgtgattgtagaaagtgaaaaa
gtgagtgatgataaagctgcagaattatcgttcaacttatctcagaaaattcaaacagac
atgacctatccgggacaagtaaaaatcaccgttattcgtgaaactagagctgtgaacata
gctaaatag
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