Capnocytophaga endodontalis: CBG49_05965
Help
Entry
CBG49_05965 CDS
T04940
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
capn
Capnocytophaga endodontalis
Pathway
capn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
capn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBG49_05965 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
capn03021
]
CBG49_05965 (rpoC)
03400 DNA repair and recombination proteins [BR:
capn03400
]
CBG49_05965 (rpoC)
Enzymes [BR:
capn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBG49_05965 (rpoC)
Transcription machinery [BR:
capn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBG49_05965 (rpoC)
DNA repair and recombination proteins [BR:
capn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBG49_05965 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ASF42652
UniProt:
A0A1Z4BMZ4
LinkDB
All DBs
Position
1278458..1282747
Genome browser
AA seq
1429 aa
AA seq
DB search
MAREKTTAVPKFDKISIGLASPESILAVSRGEVTKPETINYRTHKPERDGLFCERIFGPV
KDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERVGHINLVVPIAHIWYFRSLPNKIG
YLLGLPSKKLDMIIYYERYVVIQPGIAKGPEGEDLQYLDFLSEEEYLAITESLPADNQYL
EDTDPNKFIAKMGAECLLELLERLDLDALSYDLRHKANNESSKQRKTEALKRLQVVEAFR
ESQKNRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLME
IKAPDVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLLG
KRVDYSARSVIVVGPELKMYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDKK
EPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD
QMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYITKGRKSTPEYP
VKGEGLTFYSAEEVNIAYNEGKLSLNAFIKVKVRDLDENGNVYYPVVETTTGRVLFNELV
PLEVGYVNEVLTKKSLRDIIGRILKATSIPVTGDFLDKIKNMGYRFAFKGGLSFSLGDII
IPQEKADMIAEANGLVDGIMMNYNMGLITNNERYNQVIDVWTSTNAQLTELAMKRISTDQ
QGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSSVGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVRALKKNEE
VVETLGERVLGRVSLHDVYNPLTEELIVGAGEEITEKIVDKIEAAPIDMIEVRSALTCEA
KHGICAKCYGRNLSTGRMVQKGEAVGVVAAQSIGEPGTQLTLRTFHAGGVAGNVSEENKT
EARFDGIIEVEDLRVVSGKDNEQNPVDVVVRSSELRVLDPTTKMVLQTHDIPYGAHIFVK
DKEEVKKGTLLFQWDPYNAVIISEYSGKIAYEDIEQGVTYQVEIDEQTGFQEKVIVESRN
KKLIPTLLIVDKNGETLRSYNLPVGAHIMVDNNSKIEEGKVLVKIPRSSAKAGDITGGLP
RVTELFEARNPSNPAIVSEIDGVVSFGKIKRGNKEVIVTSRSGEERKYLVKLSSQILVQE
NDFVRAGKPLSDGSVTPDDILRIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVIVRQM
MRKVEIQDPGDTLYLEGQLVHKDDFIEENDRLFGKKVVEDAGDSENLQAGQIVSLRELRD
ENSLLKRSDKNLVIARDIIPATAMPVLQGITRASLQTKSFISAASFQETTKVLNEAAVSG
KIDTLDGLKENVIVGHRIPAGTGLKEYEKIIVGSKADMEQSVVEKKKSR
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagaaaaaacaacagctgttcctaaatttgataaaatttcgatcggtttagcc
tcccccgaatctattttagccgtttcacgcggcgaggttactaaacccgaaactatcaac
taccgtactcacaaacctgaacgcgacgggttgttttgtgagcgtattttcggtcccgta
aaggactatgaatgtgcttgtggtaaatacaaacgcattcgctataaaggtatcgtttgc
gaccgttgtggcgtcgaagttaccgaaaaaaaagtacgccgcgaaagagtgggtcatatc
aacctcgtagtgcctatcgctcacatttggtatttccgctcactacctaacaaaatcggc
tatttgttagggctcccttccaaaaagttggatatgattatctactacgagcgctatgta
gttatccaacctgggattgccaaaggcccagaaggtgaagatttacaatatttagacttc
ctttcagaagaagaatacctcgctattaccgagagtcttcctgctgataaccaatactta
gaagataccgatcccaataagtttatcgctaaaatgggcgccgagtgtctcctcgaactc
ctcgaacgtttggatttagacgcactttcttacgacttgcgccacaaagctaacaacgaa
agttctaaacaacgcaaaaccgaagcgctcaaacgcttacaagtggtagaagcgttccgc
gaatctcaaaaaaaccgcgaaaataaacctgaatggatgataatgaaggtgattcctgta
atcccgcccgaattgcgcccattggtaccgcttgatggaggtcgttttgcaacttccgac
ctcaacgacttataccgccgtgtaatcatccgtaacaaccgcctcaaacgcttgatggaa
atcaaagcacctgatgtgattttgcgcaacgaaaaacgtatgttgcaagagtctgttgat
tcactcttcgataacactcgtaaatcatcagcggtaaaaaccgaatctaaccgtccgctc
aaatccctttccgactcattgaaaggtaaacaagggcgattccgtcagaacctcctcggt
aaacgtgtggactactctgcgcgttccgttattgtggtaggtcctgaactcaaaatgtat
gaatgcggtttgccaaagaatatggcagccgaactctataaaccgtttgtaatccgtaag
ctcatcgagcgcggtatcgtaaaaacggtgaaatcagctaaaaaaatcatcgacaaaaaa
gaacctgtagtatgggacatcttggagaacgtgatcaaaggtcaccctgtcctcctcaac
cgtgcccctacattgcaccgtttgggtattcaggcattccagcctaaacttatcgagggg
aaagctatccagttgcacccattggtgtgtacagcgttcaatgccgacttcgacggtgac
cagatggcggtgcacttgcctcttggtcctgaggctatcctcgaagctcaactcttgatg
ttggcttctcacaatatcctcaaccctgccaatggttcacctattacggtaccttcacaa
gatatggtcttggggctttactacatcaccaaaggtcgtaaatccacccctgagtatcct
gtcaaaggcgaaggtctcactttctattctgccgaagaggtaaatatcgcttacaacgaa
ggcaaattgagcctcaacgctttcatcaaagtgaaagtacgcgacctcgacgagaatggc
aatgtgtattaccccgtagtagaaactactactgggcgtgtgctcttcaacgagctcgtg
cctttagaagtgggctatgtaaacgaagtacttactaaaaaatctctccgcgacatcatc
ggtcgtatcctcaaagcaaccagcatccctgtaacaggtgacttcttggataaaatcaag
aatatggggtatcgttttgccttcaaaggtggattgtcattcagtttaggggatatcatc
atcccacaagaaaaagcggatatgattgctgaagctaacggtctcgttgatggtattatg
atgaactataatatggggctcatcaccaataacgaacgttataaccaagtgattgacgtc
tggacatctaccaatgcacaactcaccgaattggcaatgaaacgcatcagtaccgatcaa
caaggattcaactctgtgtatatgatgctcgactccggagcgcgtggttctaaagaacag
attcgtcagcttaccggtatgcgtggtttgatggctaaacctaaaaaatcaagcgttgga
gggggcgaaatcatcgagaaccctatcttgtcaaactttaaagaaggtttgtcaatcctc
gagtacttcatttctacccacggggctcgtaaaggtcttgccgatactgctttgaaaact
gccgacgcaggttacttaactcgtcgtttggtcgatgtatctcaagacgtaatcatcaac
accgaagattgtggtaccttgcgcggggtagaagtacgtgccctcaaaaagaacgaggaa
gtagtagaaactcttggcgagcgcgttttaggacgtgtgtcgctccacgatgtctacaac
cctctcaccgaagaactcattgtgggtgctggtgaagaaattactgaaaaaatagtagat
aaaatagaagccgctcctatcgatatgatagaagtgcgctctgcacttacttgtgaagct
aaacacggtatttgtgcaaaatgttacggtcgaaacctttctaccggtcgtatggtacag
aaaggggaagccgtaggggtagttgctgcccaatctatcggtgagcctggtactcagctt
accttgcgtactttccacgcggggggggttgccggtaacgtatccgaagaaaacaaaacc
gaagcgcgtttcgatggtatcatcgaagtagaagatttgcgtgtggtaagcggtaaagat
aatgaacaaaaccctgtagatgtggtggttcgttcttctgaactccgcgttcttgacccc
actactaaaatggtgcttcaaacacacgatatcccttatggagctcacatctttgtaaaa
gacaaagaagaagtgaaaaaaggcactttgctcttccaatgggatccgtacaacgccgta
atcatctccgaatattctggtaaaatcgcttacgaagatatagaacaaggggttacttac
caagtagaaatcgacgagcaaacaggcttccaagaaaaagtgattgttgaatcacgtaat
aaaaaactgattcctaccttgcttatcgtcgataaaaacggcgaaacactacgttcttat
aacttgcctgtgggagctcacattatggtggataacaatagcaaaattgaagaaggtaaa
gtactcgtgaaaataccgcgtagctctgctaaagctggggatatcacaggaggtcttcct
cgtgttaccgagctcttcgaagcacgtaacccatcaaaccctgctatcgtatccgaaatc
gacggggtggtgtcattcggtaaaatcaaacgtggtaataaagaggttatcgttacttct
cgttcaggtgaggaacgcaagtacttagtaaaactttcaagccaaatcttggtacaagaa
aacgactttgtacgtgcaggcaaaccgctctccgatggctctgtaactcctgatgatatt
ttgcgtatcaaaggaccttcagcagtacaacagtacttagtaaacgaagtacaagaggta
taccgcctccaaggggtgaaaatcaacgataaacactttgaagtaatcgttcgccaaatg
atgcgtaaagtcgaaattcaagacccaggtgataccctctacctcgaaggtcagttggtt
cacaaagacgactttatcgaagaaaacgaccgcctattcggtaaaaaagtagtagaagat
gctggtgactccgaaaacttacaagcaggacaaatagtgagcctccgcgaattgcgcgat
gaaaactcactccttaaacgctccgataagaatttggttatcgctcgcgatatcatccct
gctaccgctatgccagtgttacaaggtattacacgcgcttcattgcaaaccaaatcgttc
atctcagcagcttctttccaagaaactactaaagtgttgaacgaagcagcagtaagtggt
aaaatagatacccttgatggcttgaaagaaaacgtaatcgttggtcaccgtattcctgct
ggtactgggcttaaagaatacgagaaaatcatcgtcggatctaaagcggatatggaacaa
tctgtagtcgaaaagaaaaaatcacgataa
DBGET
integrated database retrieval system
