Capnocytophaga endodontalis: CBG49_08755
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Entry
CBG49_08755 CDS
T04940
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
capn
Capnocytophaga endodontalis
Pathway
capn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG49_08755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capn03019
]
CBG49_08755
03400 DNA repair and recombination proteins [BR:
capn03400
]
CBG49_08755
Enzymes [BR:
capn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBG49_08755
Messenger RNA biogenesis [BR:
capn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBG49_08755
DNA repair and recombination proteins [BR:
capn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CBG49_08755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
DUF4735
ResIII
Peptidase_S28
JAB
SKI
Motif
Other DBs
NCBI-ProteinID:
ASF43155
UniProt:
A0A1Z4BPE5
LinkDB
All DBs
Position
complement(1959451..1961349)
Genome browser
AA seq
632 aa
AA seq
DB search
MENEPLYTLKKYWGYDNFRNSQEAVIKSVLEGNDTLALLPTGGGKSITFQVPAMMRKGIC
IVVSPLIALMTDQVEALKNREIRALSLAGGLPYPELERLLNNALYGQYKFLYLSPERLQQ
EVVRNYLKVMPINLIVIDEAHCVSLWGKDFRPAYLQCKWLKEQFPNIPLLALTASATLQV
QQDILHQLGIEKANVISTSLARPNIAYKVYKVKSKFHHLLQLLRTTEGTAIIYLRSRNAC
VQLARLLENHNISATYFHGGIPAEEKNNKLSMWLLNDVRVMVATNAFGMGIDKPDVRWVI
HWDIPQTLEDYFQEAGRAGRDGNPAEAIVFYNEVDIKNAEKLLNEYLIDIPYLKIVYSKL
NSYFQIAIGEGTENTYSFLFPDFCKRYNLLPLKTYNALQVLDRFSIISFNHHFYNKVTFQ
MKATPEQLVKYITTHRYIKNITIYLMRCYELIFHFPVELEMAKLMERTEKSHKEIMGYLE
TLHNDGIGVLKCETADIQIIFNVPRDDDRTINSIGKHIKEYNHSKRLLQNKVYQYLEDEN
TCRSIFLLEYFGEKNGKPCGICSNCVTQMHSPKTNKQKIEADILQLLSSKPFNCNDLINT
LPYSDQQINTVLDELFAMKKITFNIFNELYLK
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaacctctatacacactaaaaaaatattgggggtacgataattttcgcaac
tctcaagaagccgtgatcaaatcagttttagaaggtaatgataccttagccttattgcct
acaggtggaggaaaatctattacttttcaagtacccgctatgatgcgcaaaggtatatgt
atagtagtctctccattgatagctctgatgaccgaccaagttgaagcgcttaaaaacaga
gaaatacgtgcattatcattagccggaggtctgccctaccccgaattagaacgcctgcta
aacaacgcactttatgggcaatacaaattcttatacctttctcctgaacgtctgcaacag
gaagtcgtgcgtaattacctcaaagtaatgcctatcaatctaatagtgatagatgaagct
cattgcgtatcgctctggggcaaggacttccgccctgcttatttacagtgtaaatggctc
aaagaacaattccctaatatacctttattagctctcactgcttctgctactcttcaagta
caacaagatattttacatcaattaggcatcgagaaagcaaatgtaatcagtacttcttta
gctcgccctaatatagcttacaaagtatataaagtaaaaagcaaatttcatcacctttta
caactgctaagaacaaccgaaggtacagctattatatatttgcgaagtagaaatgcttgt
gttcaattggcgcgtttattagaaaaccacaatatttcagctacttattttcacggcggg
atccccgctgaagaaaaaaataacaaactgagtatgtggttgctaaacgacgtacgtgta
atggtagctacaaacgcctttggtatgggaatcgacaaacccgatgtccgctgggtgatt
cattgggatatccctcaaaccttagaagattatttccaagaagcaggtagagcaggtaga
gatggtaaccccgctgaggccatcgttttctacaatgaggtagatataaaaaatgccgaa
aaacttctaaatgaatatcttatagacattccttatctaaaaatcgtttacagtaaactc
aatagttacttccaaatagccataggagaaggtaccgaaaatacctatagcttcctattc
cccgatttttgtaaacgctacaacttattgcctttaaaaacttataacgctttacaagta
ttagatagattttcaatcatttccttcaaccaccatttctacaacaaagttactttccaa
atgaaagctacccccgaacaattagtgaagtatataactactcatcggtatatcaaaaac
attactatttatcttatgaggtgctacgaactgatatttcacttcccagtagagttagaa
atggctaaattgatggaacgtaccgaaaaatctcacaaagaaattatggggtatttagaa
actctgcacaacgatggaataggcgttttaaaatgtgaaactgccgatatacaaatcatt
ttcaacgtgcctcgtgacgatgatcgcacaatcaatagcattggcaaacacatcaaagag
tataaccactccaaacgattattgcaaaacaaagtatatcaatacttggaagatgaaaat
acttgccgaagtatattcttattagagtattttggcgagaaaaatgggaaaccttgtggt
atatgttctaattgtgttactcaaatgcactcccctaaaaccaataaacaaaaaatagag
gctgatatccttcaattattatcttctaaaccttttaattgcaacgatttaataaataca
ctaccctactctgatcagcagattaacactgtcttagacgaactttttgcaatgaaaaaa
ataacgttcaacatttttaatgaattgtacttaaaataa
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