Capnocytophaga endodontalis: CBG49_14055
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Entry
CBG49_14055 CDS
T04940
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
capn
Capnocytophaga endodontalis
Pathway
capn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG49_14055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capn03019
]
CBG49_14055
03009 Ribosome biogenesis [BR:
capn03009
]
CBG49_14055
Enzymes [BR:
capn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBG49_14055
Messenger RNA biogenesis [BR:
capn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBG49_14055
Ribosome biogenesis [BR:
capn03009
]
Prokaryotic type
rRNA helicases
CBG49_14055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ParBc
RecG_N
Motif
Other DBs
NCBI-ProteinID:
ASF44125
UniProt:
A0A1Z4BS37
LinkDB
All DBs
Position
complement(3114524..3116278)
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AA seq
584 aa
AA seq
DB search
MNLFEQLGLDEPILKAINDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFP
LLQLIDTDSRVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQARSLK
KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST
WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISIVILPKSEVKKIKTIEKM
IGQPFEQKQLPSGMEICEIQLYHLANNLKNTEVNPAIDDYLPAIYKELQEVNREELIKKI
FSVEFTRFFNYYKNAENLSIENERESRSGGSSDEVRYFINIGERDGYDWKSLKDFLKATL
NLGRDDVFKVDVKNSFSFFNTDADLSDLVMSTFTDFQMDGRFINVELSTKGAGRDRGGRK
RGNDDGRKHGNDEGRSRKKGQRESRKQKTAEALQQAFKKKKKRK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattaggtcttgatgaacctatcctcaaagccatcaacgatatg
ggctttgaaactccttctgaaattcagcaaaaagccattcctactcttttggcaaatggt
gctgatatggtagctttagcccaaacgggtactggtaaaacagccgcttttggctttcct
ctcctccaacttattgatactgatagccgtgtaactcaaggtcttatcctttcacctaca
cgcgaactctgcttgcaaatcgcttctgagctccgcaattatgctaagtacctccctaag
gtaaacgtagtggcggtatatggcggtgcaagtatcgaggaacaagcgcgtagcctcaaa
aaaggcgctcaaattatcgtggctactcctggacgtatgcaagatatgatacgccgtaac
ttcgtagatatcagtcatatcaattattgtgtgctggacgaagccgacgaaatgctcaat
atgggcttctatgaagatattactgcaattctatcacatactcctcaagaaaaaagcact
tggctcttttcggctactatgcctaacgaggtggctaagatagcgcgcaagtttatgcgt
aagcctatcgaaataaccgtaggaactcgcaatcaggctactaacaccgtgcaacacgag
tactatatagtgagcggtcgccatagataccaagccctaaaacgcctcgccgatgctaac
cccgatatcttctcggtagtgttttgccgcaccaaacgcgatacacaggcagtagccgaa
aaactcattgaagatggctacaacgctgctgcccttcacggtgatttgagtcagaatcaa
cgtgatttggtaatgaaatctttccgcgcacgccaaatacaaatgctcgtcgctaccgat
gtcgctgcccgaggcattgatgtagacgatatcacccacgtaattcactaccaattgccc
gacgaaatagaaacctacaaccaccgcagtggacgtacaggtcgtgctggtaaatcggga
atttcaatagtaattttaccaaaaagtgaggtgaagaaaatcaaaactatcgaaaagatg
atagggcaaccttttgagcagaaacaattgccgtcgggtatggaaatctgcgagatacag
ctctatcacttggctaacaacctcaaaaatacagaagtaaaccctgccatcgacgattat
ttgccagctatctataaagaactgcaggaagtaaaccgtgaagagctcatcaagaaaata
ttctcagtagagtttacgcgtttctttaattattataaaaatgccgaaaacttatcgata
gagaacgagcgcgaaagccgcagtgggggtagtagcgatgaagtgcgctatttcatcaac
ataggtgaacgcgatggctacgactggaaatctctcaaagatttcctcaaagcaaccctt
aatttaggtcgtgatgatgttttcaaagtagatgtaaagaacagtttttctttcttcaat
accgatgccgacctctccgatttggtgatgagcacctttaccgattttcaaatggacggt
cgcttcatcaatgtagaactctctaccaaaggagctggcagagaccgcggtggacgcaaa
cgcggaaatgatgacggcagaaaacacggcaacgatgagggtagaagtcgcaaaaaagga
caaagagaaagtcgcaaacaaaagactgctgaagctctccaacaggcttttaaaaagaag
aaaaaacgtaaataa
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