Capnocytophaga sp. oral taxon 902: HW278_03445
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Entry
HW278_03445 CDS
T08773
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
capo
Capnocytophaga sp. oral taxon 902
Pathway
capo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
capo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HW278_03445 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
capo03021
]
HW278_03445 (rpoC)
03400 DNA repair and recombination proteins [BR:
capo03400
]
HW278_03445 (rpoC)
Enzymes [BR:
capo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HW278_03445 (rpoC)
Transcription machinery [BR:
capo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HW278_03445 (rpoC)
DNA repair and recombination proteins [BR:
capo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HW278_03445 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QLF49822
LinkDB
All DBs
Position
822294..826580
Genome browser
AA seq
1428 aa
AA seq
DB search
MAREKNTAVPKFDKISIGLASPESILAVSRGEVTKPETINYRTHKPERDGLFCERIFGPV
KDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERVGHINLVVPIAHIWYFRSLPNKIG
YLLGLPSKKLDMIIYYERYVVIQPGIAKGPEGEDLQYLDFLSEEEYLAITESLPADNQYL
EDTDPNKFIAKMGAECLLELLERLDLDALSYDLRHKANNESSKQRKTEALKRLQVVEAFR
ESQRNRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLME
IKAPDVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLLG
KRVDYSARSVIVVGPELKMYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDKK
EPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD
QMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYITKGRKSTPEHP
IKGEGSVFYSAEEVNIAYNEGKLSLNAFIKVKVRDLDENGNVYYPVVETTTGRVLFNELV
PLEVGYINEVLTKKSLRDIIGRILKATSIPVTGDFLDKIKNMGYRFAFKGGLSFSLGDII
IPQEKADMIAEANGLVDGIMMNYNMGLITNNERYNQVIDVWTSTNAQLTELAMKRISTDQ
QGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSSVGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVRALKKNEE
VVETLGERVLGRVSLHDVYNPLTEELIVGAGEEITEKIVDKIEAAPIDMIEVRSALTCEA
KHGICAKCYGRNLSTGRMVQKGEAVGVVAAQSIGEPGTQLTLRTFHAGGVAGNVSEENKT
EARFDGVLEIEDLRVVRGKDNEQNPVDVVVRSSELRVLDPTTKMVLQTHDIPYGAHIFVK
DKEEVKKGTLLFQWDPYNAVIISEYSGKIAYEDIEQGVTYQVEIDEQTGFQEKVIVESRN
KKLIPTLLITDKNGETLRSYNLPVGAHIMVDNNSKIEEGKVLVKIPRSSAKAGDITGGLP
RVTELFEARNPSNPAIVSEIDGVVSFGKIKRGNKEIIVTSRSGEERKYLVKLSSQILVQE
NDFVRAGKPLSDGSVTPDDILRIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVIVRQM
MRKVEIQDPGDTLYLEGQLVHKDDFIEENDRLFGKKVVEDAGDSENLKAGQIVSLRELRD
ENSLLKRSDKNLVIARDVIPATAMPVLQGITRASLQTKSFISAASFQETTKVLNEAAVSG
KVDFLDGLKENVIVGHRIPAGTGLKEYEKIIVGSKADLEPVVEKKKSR
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagaaaaaaatacagctgttcctaaatttgataagatttcgattggtttggcc
tctcctgaatctatcttagccgtttcacgcggtgaggttactaaacctgaaactatcaac
tatcgtactcacaaacctgaacgcgacgggttgttttgtgagcgtatttttggtcctgta
aaggactatgaatgtgcttgtggtaaatacaaacgcattcgttataaaggcatcgtctgc
gaccgttgtggcgtggaagtaaccgagaaaaaagtacgccgcgaaagagtaggacatatc
aaccttgtggtgcctatcgctcacatttggtatttccgctcattacctaacaaaataggt
tatttgttagggcttccttcgaaaaagttggatatgatcatctactacgagcgctatgta
gttatccaaccaggtattgccaaaggaccagaaggtgaagatttacaatacttagacttc
ctttcagaagaagaatatctcgctattactgagagtcttcctgctgataaccaatattta
gaagatactgaccctaataagtttatcgctaaaatgggggctgagtgccttcttgaactc
ttagaacgtttggatttagacgcactttcttacgacttgcgtcacaaagctaataacgaa
agttctaaacaacgcaaaactgaagctcttaaacgcttacaagtggtggaggcgttccgc
gaatctcaaagaaaccgcgagaacaagcctgaatggatgataatgaaggtgattcctgtg
attccgcctgaattgcgcccgttggtaccgctcgatgggggacgttttgcgacttccgac
cttaacgatctttacagacgtgtgattattcgcaataaccgtttaaaacgattgatggaa
atcaaagcgcctgatgtgattttgcgcaatgagaaacgtatgcttcaagagtcggtagat
tcacttttcgacaacacacgtaaatcatcagctgtaaaaacagagtctaatcgtccgctt
aaatcactttctgactcattgaaaggtaagcaagggcgcttccgtcagaacctcctcggt
aaacgtgtagactattcagcacgttcggtaattgtggtaggtcctgaactcaaaatgtac
gaatgtggtttgccaaagaatatggcagccgaactctataagccgtttgtaatacgtaag
ctcatcgagcgcggtattgtgaaaacggtgaaatcagctaagaaaatcattgacaagaaa
gagcccgtagtatgggatatcttggagaatgtgatcaaaggtcaccctgtactactgaac
cgtgctcctactttgcaccgtttgggtattcaggcattccaacctaagctcatcgaaggg
aaagcaatacagttgcacccgcttgtatgtacagcgttcaatgccgacttcgacggtgac
caaatggcggtgcacttgccattaggtcctgaggctatcttagaggcacaactcttgatg
ttggcttcacacaatatcctcaaccctgcgaatggttcgcctattactgtaccttcacaa
gatatggtcttggggctttactacatcaccaaaggtcgtaagtctacccctgaacatcct
attaaaggggaaggctcagttttttattcagcagaagaagtgaatatcgcttataacgaa
ggaaagctcagcttaaatgcttttattaaagtgaaagtgcgtgacctcgacgaaaatggc
aatgtgtattatcccgtagtagaaactaccactggacgtgtgctcttcaatgagcttgtg
cctttggaagtaggctacatcaacgaggtacttaccaaaaaatcattgcgtgatatcatc
ggtcgtatcctcaaagctaccagcattcctgtaacgggagacttccttgacaaaatcaag
aatatgggataccgttttgcctttaaaggcggattgtcgtttagtttaggggatatcatc
attccgcaagaaaaagctgatatgatagccgaagctaacggactcgtagatggtattatg
atgaactataatatggggctcatcaccaacaacgaacgttataatcaggtgattgacgtg
tggacatctaccaatgcgcaacttactgaattggcgatgaaacgcatcagtacagaccag
caaggattcaactcagtatatatgatgctcgactcgggagcgcgtggttctaaggagcaa
attcgtcagcttaccggtatgcgtggtttgatggcaaaacctaagaaatcgagcgtaggg
ggtggtgaaatcatcgagaaccctatcttgtcgaactttaaagaaggactgtctatcctc
gaatactttatctctacccacggtgcccgtaaaggtcttgccgataccgctttgaaaaca
gccgacgcaggttacttaactcgtcgtttggtagacgtatcgcaagacgtaatcatcaac
accgaagattgtggtaccttgcgtggagtagaagtacgtgccctcaaaaagaacgaggaa
gtagtagaaactcttggcgagcgcgttttaggacgtgtgtcgcttcacgatgtatacaat
cctctcactgaagaacttattgtgggtgctggtgaagaaattactgaaaaaatagtagat
aaaatagaagccgctcctatcgatatgatagaagtacgctcggcacttacctgtgaagca
aaacacggtatttgtgcaaaatgttacggtcgcaacctttctaccggacgtatggtacag
aaaggggaagccgtaggggtagttgctgcccagtctatcggtgaaccaggtacccagctt
accttgcgtaccttccacgcaggtggggttgcaggtaacgtatcagaagaaaataaaact
gaagcccgttttgacggtgtactagaaatagaagacttacgcgtagttcgtggtaaagac
aacgaacaaaaccctgtggacgtagtagtgcgttcatctgagctccgcgtgcttgaccct
actaccaaaatggtacttcaaacacacgatattccttatggagcgcacatctttgtaaaa
gacaaagaagaagtgaaaaaaggaactttactcttccaatgggatccctataatgcggta
atcatctcggaatactctggtaaaatcgcttatgaagatatcgaacagggagttacttac
caagtggaaatagacgagcaaacaggcttccaagaaaaagtgattgtagaatcgcgtaac
aagaagctgattcctaccttgctcatcactgataagaatggcgaaacgctccgctcttac
aacttacctgtgggtgctcacattatggtggacaacaacagcaagattgaagaaggtaag
gtgctcgtgaaaataccgcgtagctctgccaaagctggggatattacaggagggcttcct
cgtgttactgagctcttcgaagcacgtaacccatcgaaccctgctatcgtttctgaaatt
gacggggtagtatcgttcggtaaaatcaaacgcggtaataaagagataatcgttacctca
cgctcgggcgaagaacgcaaatatttggtgaaattatcgagccaaatcttggtacaagaa
aacgactttgtacgtgcaggtaaaccactttctgacggctctgtaacacctgatgatatc
ttgcgtattaaaggaccatcggcagtacaacagtatttagtaaacgaagtacaagaggta
taccgcttacaaggagtgaaaattaacgataaacactttgaggttatcgttcgccagatg
atgcgtaaagtggaaatccaagatccaggtgatactctttacctcgaaggtcagttagtt
cacaaagacgactttatcgaggaaaacgaccgcttgtttggtaagaaagtagtagaagac
gccggagactctgaaaacttaaaagccggacaaatagtgagcctgcgtgaattgcgcgat
gagaactcactactcaaacgctccgataagaacttggtaatcgcccgcgatgtgattcct
gctactgctatgccagtgctacaaggtatcactcgtgcatcgttgcaaaccaaatcgttt
atctcagcagcttctttccaagaaactacgaaggtattaaatgaagcagcggtaagtggt
aaagtagacttcctcgacggcttgaaagaaaatgtaatcgtaggtcaccgtataccagca
ggtaccggactcaaagaatacgagaaaatcatcgtaggctctaaggccgacttagaaccc
gtggtagaaaagaaaaaatcgagatag
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