Capnocytophaga sp. oral taxon 902: HW278_03630
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Entry
HW278_03630 CDS
T08773
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
capo
Capnocytophaga sp. oral taxon 902
Pathway
capo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW278_03630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capo03019
]
HW278_03630
03009 Ribosome biogenesis [BR:
capo03009
]
HW278_03630
Enzymes [BR:
capo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HW278_03630
Messenger RNA biogenesis [BR:
capo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HW278_03630
Ribosome biogenesis [BR:
capo03009
]
Prokaryotic type
rRNA helicases
HW278_03630
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ParB_N
RecG_N
Motif
Other DBs
NCBI-ProteinID:
QLF49856
LinkDB
All DBs
Position
874765..876519
Genome browser
AA seq
584 aa
AA seq
DB search
MNLFEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFP
LLQLIDTDSRVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQARSLK
KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST
WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATSTVQHEYYIVSGRHRYQALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTIEKM
IGQPFEQKQLPSGMEICEIQLYHLANNLKNTEVNPAIDDYLPAIYKELQEVNREELIKKI
FSVEFTRFFNYYKNAENLSVENERESRSGGNSDEVRYFINIGERDGYDWKSLKDFLKATL
NLGRDDVFKVDVKNSFSFFNTDADLSDLVMSTFTDFQMDGRFINVELSTKGAGRDRGGRK
RGNDDGRRHGNDESRNRKKGQRESRKQKTAEALQQAFKKKKKRK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattaggtcttaatgaacctatcctcaaagccatcagcgatatg
ggctttgaaactccttctgaaattcagcaaaaagccattcctactcttttggcaaatggt
gctgatatggtagctttagcccaaacgggtactggtaaaacagccgcttttggctttcct
ctcctccaattgattgatactgatagccgtgtaactcaaggtcttatcctttcgcctaca
cgcgaactctgcttgcaaattgcttccgagctccgcaattatgctaagtacctccctaag
gtgaacgtagtggcggtatatggcggtgcaagtatcgaggaacaagcgcgtagcctcaaa
aaaggcgcacaaattatcgtggctactcctgggcgtatgcaagatatgatacgtcgtaac
ttcgtagatatcagtcatatcaattattgtgtgctggacgaagccgacgaaatgctcaat
atgggcttctatgaagatattaccgctattctgtcgcatacccctcaagaaaaaagcact
tggctcttttcggctactatgcctaacgaggtggctaagatagcgcgtaagtttatgcgt
aagcctatcgaaataacagtaggaactcgcaatcaggctactagcaccgtgcaacacgag
tactatatagtgagcggtcgccatagataccaagccctaaaacgccttgccgatgccaac
cccgatatcttctcagtagtgttttgccgtaccaaacgcgatactcaggcagtagccgaa
aaactcattgaagatggctacaatgctgctgctcttcacggcgatttgagtcagaatcaa
cgtgatttggtgatgaaatctttccgtgcacgccaaatacaaatgcttgtcgctaccgat
gtcgctgcccgcggtattgatgtagacgatatcacccacgtaattcactaccaattgccc
gacgaaatagaaacctacaaccaccgcagtggacgtacaggtcgtgctggtaaatcggga
atttcgatggtgattttgccaaaaagcgaggtaaagaaaatcaaaactatcgaaaagatg
atagggcaaccttttgagcagaaacaattgccgtcgggtatggaaatctgcgagatacaa
ctctaccacttggctaacaacctcaaaaatacagaagtaaaccctgccatcgacgattat
ttgccagctatctataaagaactgcaggaagtaaaccgtgaagagctcatcaaaaaaata
ttctcagtagagtttacgcgtttcttcaattattataaaaatgctgaaaacttatcggta
gagaacgagcgcgaaagccgcagtgggggtaatagcgatgaagtgcgctattttatcaac
ataggtgaacgcgatggctacgactggaaatctctcaaagatttcctcaaagcaaccctt
aatttgggtcgtgatgatgttttcaaagtagatgtaaagaacagtttttctttcttcaat
accgatgctgacctctccgatttggtaatgagcacctttaccgacttccaaatggacggt
cgctttatcaatgtagaactctctaccaaaggagctggcagagaccgtggcggacgcaaa
cgcggaaatgatgacggtagaagacacggcaatgatgagagtagaaatcgcaaaaaagga
caaagagaaagtcgcaaacaaaagactgctgaagctctccaacaggcttttaaaaagaag
aaaaaacgcaaataa
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